RNA id: TU72094


Basic Information

Item Value
RNA id TU72094
length 216
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G53462
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20007947 ~ 20008162 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctctttcctctgagtgcgctgttatcctacttggcaatgctgcatcagcagcagtttgaaaagaggtggagtctgacttcacatgtattggaggaggcatgtgctagtcttcaccctcctggtgttgtggcatcactagtgataggggggcaTATATAGCTGAGTAGCAACTGAATGGATGGGACAATCGACCTTGCTAAATTGGTAGAAAATGA

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71985 lncRNA downstream 130229 19877494 ~ 19877718 (-) True G53384
TU71981 lncRNA downstream 158882 19848820 ~ 19849065 (-) True G53380
TU71980 lncRNA downstream 173581 19833981 ~ 19834366 (-) True G53379
TU71976 lncRNA downstream 199933 19807743 ~ 19808014 (-) True G53376
TU71975 lncRNA downstream 201448 19806295 ~ 19806499 (-) True G53375
TU72099 lncRNA upstream 24692 20032854 ~ 20033088 (-) True G53467
TU72089 lncRNA upstream 25201 20033363 ~ 20034632 (-) True G53457
TU72090 lncRNA upstream 26604 20034766 ~ 20035491 (-) True G53458
TU72087 lncRNA upstream 28957 20037119 ~ 20041892 (-) True G53456
TU72101 lncRNA upstream 51737 20059899 ~ 20130157 (-) True G53469
XM_007235647.3 mRNA downstream 101874 19902293 ~ 19906073 (-) True LOC103035166
XM_022670334.1 mRNA downstream 168365 19682391 ~ 19839582 (-) True LOC103034301
XM_022670333.1 mRNA downstream 337277 19605555 ~ 19670670 (-) True LOC103036701
XM_022670332.1 mRNA downstream 437569 19522702 ~ 19570378 (-) True LOC103025665
XM_007239985.3 mRNA downstream 548572 19437633 ~ 19459375 (-) True LOC103025356
XM_007235649.3 mRNA upstream 34335 20042497 ~ 20089372 (-) False LOC103035481
XM_007235648.3 mRNA upstream 42082 20050244 ~ 20089372 (-) True LOC103035481
XM_022670338.1 mRNA upstream 307854 20316016 ~ 20392201 (-) False LOC103047709
XM_022670337.1 mRNA upstream 307854 20316016 ~ 20392201 (-) True LOC103047709
XM_022670339.1 mRNA upstream 309051 20317213 ~ 20392206 (-) False LOC103047709
TU71983 other downstream 157597 19849950 ~ 19850350 (-) True G53382
TU71687 other downstream 1340660 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 3418164 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 3418164 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 3580334 16406719 ~ 16427613 (-) False zcchc4
trnai-uau_7 other upstream 294373 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 673649 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 775576 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 809677 20817839 ~ 20819409 (-) True G53607
XR_002650112.1 other upstream 2838514 22846676 ~ 22847337 (-) True LOC111192727

Expression Profile