RNA id: TU72137


Basic Information

Item Value
RNA id TU72137
length 1290
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G53500
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20314294 ~ 20315583 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aattattgtgatttttttattgtgagatTTACCTACGCTATGGGATGTAATCAGATGGGATCCCAACAGTTTAAGAGCTTGTTTGGGCAAATTGCACagaatactggatctcagaaagctgcgatAGAGCGGAGgagagctattcaacaaaaggtAATTCCTTTTTGATCACTTTTTAATACactcaaagtcaattttacaccggagttttCCTTTAAAGATGTACAAATATGAGAAAACTAGGctaattttaaagattttgaaGATGGTTTGCCTTGTAAATGGCATACTTACCCTTACCAGCCAATAaagtggtaacttgctcttactgCCTTCAACATTAAAGGCAGGCAGCTGTACCATTACATATATGAAGAgtggggggaatgactacacactgaaggtgagcaaaacggagaaaaaaacaaacccaaCTCAGCTTGTACCAATGAAATTAAATCAGTTTGAGTTTCAAttcaatatacagtaatttGATTCAATTTGATGTAATAGCGGTACATTTAGAGGTATTTCTGTTACAGGATTACAATTACAGGATTTGTTTggatatgaaaatattttttttagatcttgAGCATAAAAACATCTGGTTTCATGAGATTAAAGGGAGTTAAAGAGAAGGTTTACGCACACAGTCAAAAAAATAGTGTAATTTAAAAGGTCAATCTTTCTGTATGAATCGATATCGGATCATTTAAATGAGGATCAATCTGAATcaaaaaatcaaatttttaaACCCACCCTTACTAACAGGACAGGATGGTGATCTACAATACTAAAAtactctaataacattaataataatttctgcTGCAGTCATAATCCAAATGACAAATGTGAATAATGGCTTCAGGCTACTATCGTTTACACTGAATGGCATTTATCcttaacttgaaaaaaaaattgttcgaGTTAAAGGAGCcctttcaggaaaaaaaaaaaaaaaagaaaggtagagtggaagaaaaaatacaaatcaaaaagTACGAATGGTACTGCAATCTAGCACTTTGGCCACAGACATAAGCTTGTTTCCCCTGAACTTTCATACAGAGTTCCAGATCTGAGAAAGCGATgtgaaaatagtgaaaaaaataatgcattacagAACAGGAAGTCTCCCTGATGCAGATCCAGGCTGTTTATACCGCATGTGACAGTCATAACGATCAGctactttcttattttttatttctacgcTTCATACATTATGTTGTGTTTCCTTGTATGTCACATGTGTTAAGTGAAATATGCTGAATAAAATAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72139 lncRNA downstream 248 20313128 ~ 20314046 (-) True G53502
TU72101 lncRNA downstream 184137 20059899 ~ 20130157 (-) True G53469
TU72102 lncRNA downstream 198295 20059899 ~ 20115999 (-) False G53469
TU72106 lncRNA downstream 202154 20103906 ~ 20112140 (-) True G53473
TU72103 lncRNA downstream 213499 20090878 ~ 20100795 (-) True G53470
TU72136 lncRNA upstream 26812 20342395 ~ 20352851 (-) True G53499
TU72206 lncRNA upstream 228021 20543604 ~ 20550201 (-) True G53554
TU72214 lncRNA upstream 291194 20606777 ~ 20607592 (-) True G53559
TU72224 lncRNA upstream 305140 20620723 ~ 20646509 (-) True G53563
TU72223 lncRNA upstream 305986 20621569 ~ 20690422 (-) False G53562
XM_007235649.3 mRNA downstream 224922 20042497 ~ 20089372 (-) False LOC103035481
XM_007235648.3 mRNA downstream 224922 20050244 ~ 20089372 (-) True LOC103035481
XM_007235647.3 mRNA downstream 408221 19902293 ~ 19906073 (-) True LOC103035166
XM_022670334.1 mRNA downstream 474712 19682391 ~ 19839582 (-) True LOC103034301
XM_022670333.1 mRNA downstream 643624 19605555 ~ 19670670 (-) True LOC103036701
XM_022670338.1 mRNA upstream 433 20316016 ~ 20392201 (-) False LOC103047709
XM_022670337.1 mRNA upstream 433 20316016 ~ 20392201 (-) True LOC103047709
XM_022670339.1 mRNA upstream 1630 20317213 ~ 20392206 (-) False LOC103047709
XM_022670340.1 mRNA upstream 27327 20342910 ~ 20392195 (-) False LOC103047709
XM_007230972.3 mRNA upstream 226281 20541864 ~ 20556330 (-) True pigf
trnai-uau_7 other downstream 11666 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 463944 19849950 ~ 19850350 (-) True G53382
TU71687 other downstream 1647007 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 3724511 16588150 ~ 16589783 (-) True G52652
TU72221 other upstream 366228 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 468155 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 502256 20817839 ~ 20819409 (-) True G53607
XR_002650112.1 other upstream 2531093 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 2775723 23091306 ~ 23091975 (-) True G53996

Expression Profile