RNA id: TU72214


Basic Information

Item Value
RNA id TU72214
length 443
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G53559
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20606777 ~ 20607592 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caattaaatattatacaaacgTTATGTTCACAAGTCACATTAGCGAGAGTGCTAAATATTCATGCTGAAAGTAGgtaactaactcactagttcactgactagctaactcactagctcactgagtaggtaactcactagttcactgactaggtaactcactagttcactgactagctaactcactagttctctgactaggtaactcactagttcactgaatagctaacccactagttcactgactagctaactcactagttctctgactaggtaactcactagttcactgactaggtaactcactagttcactgactagctaactcactagctcactgagtaggtaactagctaactcactagctcattgactaagataactgactagttcactgattaggtaactagctaactcactagctcattgactaagataactgacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72206 lncRNA downstream 56576 20543604 ~ 20550201 (-) True G53554
TU72136 lncRNA downstream 253926 20342395 ~ 20352851 (-) True G53499
TU72137 lncRNA downstream 291194 20314294 ~ 20315583 (-) True G53500
TU72139 lncRNA downstream 292731 20313128 ~ 20314046 (-) True G53502
TU72106 lncRNA downstream 494637 20103906 ~ 20112140 (-) True G53473
TU72224 lncRNA upstream 13131 20620723 ~ 20646509 (-) True G53563
TU72223 lncRNA upstream 13977 20621569 ~ 20690422 (-) False G53562
TU72209 lncRNA upstream 28714 20636306 ~ 20637291 (-) True G53556
TU72234 lncRNA upstream 148041 20755633 ~ 20755885 (-) True G53573
TU72269 lncRNA upstream 183616 20791208 ~ 20791497 (-) True G53599
XM_007230971.3 mRNA downstream 26173 20572412 ~ 20580604 (-) True LOC103043231
XM_022670343.1 mRNA downstream 38582 20562271 ~ 20568195 (-) True LOC103047390
XM_007230972.3 mRNA downstream 50447 20541864 ~ 20556330 (-) True pigf
XM_022670339.1 mRNA downstream 214571 20317213 ~ 20392206 (-) False LOC103047709
XM_022670338.1 mRNA downstream 214576 20316016 ~ 20392201 (-) False LOC103047709
XM_022670347.1 mRNA upstream 376867 20984459 ~ 21384885 (-) True LOC103027095
XM_022670348.1 mRNA upstream 1048025 21655617 ~ 21669948 (-) False LOC103044518
XM_022670350.1 mRNA upstream 1048025 21655617 ~ 21669931 (-) False LOC103044518
XM_022670349.1 mRNA upstream 1048025 21655617 ~ 21669786 (-) True LOC103044518
XM_007250120.3 mRNA upstream 1223247 21830839 ~ 21870274 (-) True LOC103047279
trnai-uau_7 other downstream 304149 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 756427 19849950 ~ 19850350 (-) True G53382
TU71687 other downstream 1939490 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 4016994 16588150 ~ 16589783 (-) True G52652
TU72221 other upstream 74219 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 176146 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 210247 20817839 ~ 20819409 (-) True G53607
XR_002650112.1 other upstream 2239084 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 2483714 23091306 ~ 23091975 (-) True G53996

Expression Profile