RNA id: TU72221


Basic Information

Item Value
RNA id TU72221
length 2225
RNA type TUCP
GC content 0.37
exon number 4
gene id G53562
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20621569 ~ 20690422 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTTGGGAtaaattgttaattttattGGAAAACAAATATACAACTTGGAATGGATTCTTTGAGGCATGGTAGTGCcataagcagttaaaaaaagaaaaagaagaagaagtgacTAATTATAAAGCATAGTAATAACCTGGAGaacagaacaaatacaaaaaaagactaTATAGTGTACGAGTACCTGCCGATAAACCCGTTATTTCATTCACTGATGTTGCAATTAGTGCAATGTTGAggataattattttttccacaCATATATACTTAGTCCGTTGCCCATGCAGAGTAGCTCCTCCACAgaaatcaaaacaaacaaaaaatgggggaaataaaagaaaaagaaagaagaaaaaaacaaaaccaaaatcaTCATCAGTCAGCTGGACCCTCAAAACCTCCACTCATCAGGtggcaggcaggcagacagcAAAAAAGCCCAAAGAGAAGGAAGTGCCAGCCAGCCAACATGTGTGCCTATACCCTTCACCTGGTCCTGTGACTGGACTGCTTCTTAGATCAAAAAGAAACATTAACAATGCACATGGAGGGGAagatgggagaaaaaaaaattcagacatGCAGTTCCTTTGGACAGCAGGAGAAGATGAGTAGAATTAAAATGAAAGATTTTACAGAAATTACAAAGAAAAGGCAAATATTTTATACAAGAAATTCTGTACAAGGCCTTCACTTCGCTGTCATCATCTGTACAAAttctgtggagagagagagagaggaaaaaaaggacTTAACTCACTAAGTCACTAAGCATTCTTCCACAGATTTCTTTTCTACATCAAAATTAAGAATGAACAATGACtagagctgcacgatattggaaaaaaaagtgacattgtgatattaaaaagaTTTCTTTAATAGATATGTGATTCAACATCAAGCTCAATGTACCAACAATTGGAGTAATCAAATATGACCTGCCTTTAGAatagaatttaaataaataaataaaatggtgctAAATAACTCTCTGGATTAAAGCAACATGATGTGTATGGTTTAATTAGCTCTAGATCTGTTCTGGATTCTTTATTCCCGTCAATCatttacagggttcatacacgttttaaccaatacatttccatgattttttttcatgacttttctatgccttcaaggcaaattttcatgaccatacgatttttaaaacatcagtgcagacatggacaataaaaaaaaaacaaaagtaaactaaaactataaattaaatttactatagtaggtctaaacaaatctaataaaaaacgTTGACACacaagctttaaaaataaaatgtgcgtCAGTTTCTAAGAGCTCCATTGTGTTGATgcatttgttagctcaaaattttctccatcgataaactgaaacacaaagatttgtgtttttatttttccaaaacttatccaggcctggaaattgccattttcaaatttcatgacttttccacgTTTTTCATGACCAAACAAGCCCTGATTTACTAAATATGTCCATGTTTACGTCATTGCAAGGGCCCTACACTGCATGTATTGCAAAGTGACTATTGGTCTATCTTGTGCACATCACAGTAACAAAGCTCTAATCTGTGCATAATGCAGCCCTAACAGTGACCCAGTCCACCTACCTTCATAATTGACCTGGCCATCACCATCAATATCTGCTTCTCTGATCATTTCGTCTACTTCCTCGTCCGTTAACTTCTCCCCCAGGTTTGTCATTACGTGACGCAGCTCAGCAGCACTGATGTATCCGTTTCCATcctggaaaaaacaaacaaaaaaaacatataggtCATTAAGCAACGGGGCCGCTATGAGGACGGACGGACACTGAGAAACACAGATAAGCCTGTAGAGATCATACACACCTTGTCAAAGACACGGAAAGCTTCCCTGATCTCTTCCTCACTGTCTGTGTCTTTCATCTTCCTCGCCATCATGGTCAAGAACTCTGGAAAGTCTATTGTTCCGTTACCATCTGCATCTACTTCATTGATCATGTCCTgtagctctgcctctgttgggTTCTGGCCAAGGGAGCGCATCACTGTACCAAGCTCTTTGGTGGTTATAGTACCATCTCCATCTTTGTCGAATAGCGAGAAAGCCTCTTTGAACTCAGCAATCTGCTCTTCTGTAAGTTGATCAGCCATTTTGCTGTATTTGTGTGTCTTCCTCCCACAAGCCGCTTCTCAAATGGAGAACTGAAATTTCACTACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72224 lncRNA downstream 35302 20620723 ~ 20646509 (-) True G53563
TU72209 lncRNA downstream 44520 20636306 ~ 20637291 (-) True G53556
TU72214 lncRNA downstream 74219 20606777 ~ 20607592 (-) True G53559
TU72206 lncRNA downstream 131610 20543604 ~ 20550201 (-) True G53554
TU72136 lncRNA downstream 328960 20342395 ~ 20352851 (-) True G53499
TU72234 lncRNA upstream 65211 20755633 ~ 20755885 (-) True G53573
TU72269 lncRNA upstream 100786 20791208 ~ 20791497 (-) True G53599
TU72281 lncRNA upstream 132477 20822899 ~ 20825641 (-) True G53610
TU72407 lncRNA upstream 507091 21197513 ~ 21198057 (-) True G53709
TU72414 lncRNA upstream 608038 21298460 ~ 21300545 (-) True G53716
XM_007230971.3 mRNA downstream 101207 20572412 ~ 20580604 (-) True LOC103043231
XM_022670343.1 mRNA downstream 113616 20562271 ~ 20568195 (-) True LOC103047390
XM_007230972.3 mRNA downstream 125481 20541864 ~ 20556330 (-) True pigf
XM_022670339.1 mRNA downstream 289605 20317213 ~ 20392206 (-) False LOC103047709
XM_022670338.1 mRNA downstream 289610 20316016 ~ 20392201 (-) False LOC103047709
XM_022670347.1 mRNA upstream 294037 20984459 ~ 21384885 (-) True LOC103027095
XM_022670348.1 mRNA upstream 965195 21655617 ~ 21669948 (-) False LOC103044518
XM_022670350.1 mRNA upstream 965195 21655617 ~ 21669931 (-) False LOC103044518
XM_022670349.1 mRNA upstream 965195 21655617 ~ 21669786 (-) True LOC103044518
XM_007250120.3 mRNA upstream 1140417 21830839 ~ 21870274 (-) True LOC103047279
trnai-uau_7 other downstream 379183 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 831461 19849950 ~ 19850350 (-) True G53382
TU71687 other downstream 2014524 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 4092028 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 4092028 16588150 ~ 16589783 (-) False G52652
TU72268 other upstream 93316 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 127417 20817839 ~ 20819409 (-) True G53607
XR_002650112.1 other upstream 2156254 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 2400884 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 3650978 24341400 ~ 24351936 (-) True G54205

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009367 False 2354 mRNA 0.41 5 NC_007123.7 24952902 ~ 24958792 (+)
grasscarp (Ctenopharyngodon idella) TU301410 True 3562 lncRNA 0.39 2 CI01000063 5109364 ~ 5113104 (-)
striped catfish (Pangasianodon hypophthalmus) TU234503 False 1322 lncRNA 0.40 4 NC_047606.1 17411454 ~ 17415869 (+)