RNA id: TU72244


Basic Information

Item Value
RNA id TU72244
length 2735
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G53578
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20869289 ~ 20875453 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTGAGTTACACAGTTACTCAGTTGAGTTGCTTAGGAACTCAATTAAGTTATGCATTTACTCATTTGAGTTACTCAGTTACTCAGTTGAGTTACACAGTTACTCAATTAAATTCCTTAGTTGAGTTACACAGAAACTCAATTAAGTTAGCCAGTTACTCTATTGAGTTGCATAAGAACTCATTTGAGTTACTCAGTTACTCAATTGACTTACATGGTTACTCAGTTGAGTTGCACAGTTACTCAGTTGAGTTGCATAGGAACTCATTTGTGTTACGCAGTTACTCAGGTGAGCTACGCAGTTAATCAGTtgagttacatagttacttaaTTGAGTAACACAGTTACTCAGTTGAGTTACACAATAACTCATTTGAGTTGCTTAAGTCACTCTGCCAATTAAATACCCACATcgtcatcattatcatcaccaccaccactaatATTGCTCACATCTGGGAGtttttcttgtgtttctggTGCAAGCTCTTGAGAGCCTCAGTGGACAGCAGTTGGACAGTTAAAGGACAGTTTCAGGAGACTTTGGGAGCTGTGAGAACTTCTGcaccacacacagagacaaCCTCCAGAGAGAACCTCCTTACGCTCGAGAGGAAACCAGAGACAATGCAGACTCTGGACGAACAGCAGCTGAGGGTCAGACTGGTGCAGCcaagagaggaaaaaacactCGCGTTTCTGCAGCTAACCCTTTTTTTTGGGAGGAAGTCATGGGAACAGGCCTACAGGAAGTTGAGCTGATGAGAGAGGAAGTTGAAACGTGTGGTGAAGTTGCTGAACGCAGTCAGAAGTGGGTGAGAGACTGACTGGAGCAGTCTAATTTAAAGAATGCTCTCTCTGAGACTGGATCTGACACGGATAAGACTGGATCTGCACAGCGCTGTCCCTCTACCGGACTATTTGCGGGATTCTCTGTCCAATTTCACTCAATTTGGGTTTTCGTTTCTGTGGAATTCTCAAGGAAGTTCTCCGACAGCTGCCAGTTCCAGCTGTCGCCACATTTTGGTTTTGTTCTTTTgggttttaagtgtttaagttATGTTGTTTTTCGGGTTGTTTTCAGACTTGATCTGCCTAAATAAGAAAGTAAGAAATAGCATTgccatttatttctaattatgcCTATATTAAACCCTAATACATCCCTTAATCAGGAACCACTGCACCTGGTACTCAGGCTTGGACATAATGAATTGTTGGGTGTGGGAGAAAATATTGGtattgcgatatattgtatgatttttgtttgttatataTTATCGATGTGTGGCATCTAATATGGatctttttattgaaacataagaCTTGCCTAAGACCCAAGAGTAACACAGTTGCCATTAAAtatcatagagaattgtcttgcaatatattgagtatatacagctctgggaaaaaaataagagaccacttcagtttctaaatcagtttttctgattttgctctttataggtaaatgtttgagtaaagtcaacattgttgttttattctataaactacggacaacatttttatcaaataccaaataaaaatattgtcatttagagcatttgtttgcagaaaataagaaatggctgaaaaaacaaaagcaaaaaagttcatattcataaagttgtaagagttcagaaatcaatatttggtggaataaccctggattttaaacacagttttcatgcatcttggcatcatgttcttctccaccagtcttacacactgcttttggataactttatgcctttactcctggtgcaaaaaattcaagcagttcagtttggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttaattttgataaaatcagagaaactcttcatttttaagtggtctctttttttttttttccagtgctgtatatgGAGTttgttatccaatcagaacagtgggtacaacactgctatctagtaaTAGAgaaaatgaaccacttctgacaccaattctGACACATTTACATGTGCTAATAATTCTAAAtcgatactgtgtttttatgaatGAATACGTTATtgcaaaactaaataatattaagATATAATACGATAtcgatatcaatattttcttacacgcCTTTAGAATGACTGAGCCTATTGAACAAAAGCCTGATACAGCTACTGATACAGATTTAAACCCAGGTGATGGTGGAGTCCTGATGTCGATCCCTGATGATGGGGGTCTTTAAAACCTCCCCAATTTAATTCTACTACTTAAACTGCCTGCCATTGTGAAGTTCAGTTGATGCCCAGATATTCTCACCAAGGCTGCCAATTACCCCTGATCTGTATATAGTGATAAACCCAGAATgcaagtattattattattattattattattattattattatcatcatggAGAGGGCTGTGAGGACGGGACAGAGTTGTAGTATTACGTTTGAAGGTTATTAAAGCAGGCACTTGCTTCTCCCAGATtattgatataataataatgataacctCATGATACAGGAGAGTGATGATTATTTccctgttattattattattatttctattatttcccATTTCCCAATTCAGAGCTGCCAATCCAATCAGTTTGCTCACATTTGTCTGCCATGTCTGTCTGACAGACTCAACCTTTTGGTTTTGTAAGCTAACCTctgttaataaaatgtttataaagtttatttttgccAAAGATATGCAATTGTTGCATTATATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72254 lncRNA upstream 30037 20840867 ~ 20841695 (+) True G53586
TU72251 lncRNA upstream 46071 20806909 ~ 20825661 (+) False fbxo11
TU72233 lncRNA upstream 115791 20755722 ~ 20755941 (+) True G53572
TU72172 lncRNA upstream 308491 20562311 ~ 20563241 (+) True G53531
TU72166 lncRNA upstream 310898 20557982 ~ 20560834 (+) True cript
XR_002650039.1 lncRNA downstream 8794 20883281 ~ 20888071 (+) True LOC111192628
XR_002650040.1 lncRNA downstream 73154 20947641 ~ 20973710 (+) True LOC111192629
TU72431 lncRNA downstream 544108 21418595 ~ 21418887 (+) True G53732
TU72436 lncRNA downstream 588407 21462894 ~ 21463192 (+) True G53737
TU72441 lncRNA downstream 728157 21602644 ~ 21602856 (+) True G53742
XM_022670346.1 mRNA upstream 1113 20832749 ~ 20870619 (+) True LOC103026529
XM_007250106.3 mRNA upstream 46058 20794025 ~ 20825674 (+) False fbxo11
XM_022670345.1 mRNA upstream 46058 20796571 ~ 20825674 (+) True fbxo11
XM_022670344.1 mRNA upstream 80549 20775594 ~ 20791183 (+) True msh2
XM_007230968.3 mRNA upstream 97438 20768407 ~ 20774294 (+) False LOC103041876
XM_022670899.1 mRNA downstream 799087 21673574 ~ 21747080 (+) True LOC103028037
XM_022670351.1 mRNA downstream 874345 21748832 ~ 21786839 (+) True tmem94
XM_022670352.1 mRNA downstream 874345 21748832 ~ 21785799 (+) False tmem94
XM_007250116.3 mRNA downstream 918069 21792556 ~ 21808496 (+) False tdrkh
XM_007250115.3 mRNA downstream 918071 21792558 ~ 21808496 (+) True tdrkh
XR_454832.3 other upstream 46058 20794025 ~ 20825674 (+) False fbxo11
TU72167 other upstream 310898 20557884 ~ 20560834 (+) False cript
TU72061 other upstream 444529 20419221 ~ 20427203 (+) True LOC103044634
TU72536 other downstream 1044738 21919225 ~ 21921594 (+) True G53804
TU73348 other downstream 4671505 25545992 ~ 25549470 (+) False srp19
trnaw-cca_1 other downstream 4690174 25564661 ~ 25564732 (+) True trnaw-cca_1
trnaw-cca_2 other downstream 4690755 25565242 ~ 25565313 (+) True trnaw-cca_2
trnaw-cca_3 other downstream 4692408 25566895 ~ 25566966 (+) True trnaw-cca_3

Expression Profile