RNA id: TU72277


Basic Information

Item Value
RNA id TU72277
length 506
RNA type TUCP
GC content 0.51
exon number 3
gene id G53607
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20817839 ~ 20819409 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCTGTTCCTTCTGAGTACAGGTGTGCTCCCTGTGGTCACCCATACTCCTGCCAGAGTGTTGCTGTAGACTTCATTCTCCTCGATAACACCCTGGCCCTTCTCGTGCACATAGATGCCTCCATGCTGTCCATCATGGATCTTGTTGTGTCTCACTATAGGGCAGCTGTTAGTTCTGATCTGAATGCCAGCCAGGGCATTTCCATAAATATCGTTTCCCTCTATGAGACCCCTGCCGTCTCCAAATATGTAAACACCTCCTTGGTTTCCATTGAAGATGGCGTTACCCCTAATCGTGGGGTCACTGTTGGAGGTGATCCACACACCAGCAAAATTGTTGGCGTAGATTTTATTCTCTATGAACTGTCCCCGGCCCTTCTCATGGACGTAGATGCCTCCTGTTTGGCCGTGGTGAATTTCACAGCGTACCACCGTGGGGTTGGCGTAGGCCTTCACCTCGAAACCTGCGATCCTGTTTCTGTGGATGTTGCAGCTCTCGAAGTAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72269 lncRNA downstream 26342 20791208 ~ 20791497 (-) True G53599
TU72234 lncRNA downstream 61954 20755633 ~ 20755885 (-) True G53573
TU72223 lncRNA downstream 127417 20621569 ~ 20690422 (-) False G53562
TU72224 lncRNA downstream 171330 20620723 ~ 20646509 (-) True G53563
TU72209 lncRNA downstream 180548 20636306 ~ 20637291 (-) True G53556
TU72281 lncRNA upstream 3490 20822899 ~ 20825641 (-) True G53610
TU72407 lncRNA upstream 378104 21197513 ~ 21198057 (-) True G53709
TU72414 lncRNA upstream 479051 21298460 ~ 21300545 (-) True G53716
TU72415 lncRNA upstream 479422 21298831 ~ 21299286 (-) True G53717
TU72423 lncRNA upstream 513652 21333061 ~ 21333780 (-) True G53725
XM_007230971.3 mRNA downstream 237235 20572412 ~ 20580604 (-) True LOC103043231
XM_022670343.1 mRNA downstream 249644 20562271 ~ 20568195 (-) True LOC103047390
XM_007230972.3 mRNA downstream 261509 20541864 ~ 20556330 (-) True pigf
XM_022670339.1 mRNA downstream 425633 20317213 ~ 20392206 (-) False LOC103047709
XM_022670347.1 mRNA upstream 165050 20984459 ~ 21384885 (-) True LOC103027095
XM_022670348.1 mRNA upstream 836208 21655617 ~ 21669948 (-) False LOC103044518
XM_022670350.1 mRNA upstream 836208 21655617 ~ 21669931 (-) False LOC103044518
XM_022670349.1 mRNA upstream 836208 21655617 ~ 21669786 (-) True LOC103044518
XM_007250120.3 mRNA upstream 1011430 21830839 ~ 21870274 (-) True LOC103047279
TU72268 other downstream 30221 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 127417 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 515211 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 967489 19849950 ~ 19850350 (-) True G53382
TU71687 other downstream 2150552 18586401 ~ 18667287 (-) True G53164
XR_002650112.1 other upstream 2027267 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 2271897 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 3521991 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 3967785 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 4746865 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile