RNA id: TU72414


Basic Information

Item Value
RNA id TU72414
length 533
lncRNA type intronic
GC content 0.48
exon number 2
gene id G53716
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21298460 ~ 21300545 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTAGCTTTTCCTCTTCAGTGATTACTCTGAATAAGGAGGGGATGCAGCTGAAACGGTCTCTGTGCTATTTGTTCAGATTAGTTCCTCCAGCATTGTTTGTGCATCTGTTTCTTTTGTGAATGTTATCATTTGCACAATGCCTTGTGTGCCACCGTGGATCAATTCCAGAAATGCTGGCAACGTATCGTGTTACAGCAGCTCTCCCAACCCAATGTGAGTCAGGGGACTGGATCCCTTCTAACAGCGCAGCGCTTCCTCCTCGCTCTTTAGGACGGAGCCCAAATGAAAAGTTGATAAGCGGCTAAATTGTGGAGAGAGGGGCTATTATGTGAACTTGGCCACGAGGCCGGACCGGGCTGAAGGTTAATATATTGAGTGTGAGTACATTTGAATGCATTTGCATCTATTGACTGCAGCCGCCCATCCGTCTGTGTGCGCTGTGGgctgagaaggagagagagaaagagagagagagagagagagagagagagagagacagagagatagagacatggagagaaacagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72407 lncRNA downstream 100403 21197513 ~ 21198057 (-) True G53709
TU72281 lncRNA downstream 472819 20822899 ~ 20825641 (-) True G53610
TU72269 lncRNA downstream 506963 20791208 ~ 20791497 (-) True G53599
TU72234 lncRNA downstream 542575 20755633 ~ 20755885 (-) True G53573
TU72223 lncRNA downstream 608038 20621569 ~ 20690422 (-) False G53562
TU72423 lncRNA upstream 32516 21333061 ~ 21333780 (-) True G53725
TU72432 lncRNA upstream 129230 21429775 ~ 21430104 (-) True G53733
TU72439 lncRNA upstream 186600 21487145 ~ 21487419 (-) True G53740
TU72447 lncRNA upstream 306234 21606779 ~ 21607090 (-) True G53745
TU72445 lncRNA upstream 306243 21606788 ~ 21607090 (-) False G53745
XM_007230971.3 mRNA downstream 717856 20572412 ~ 20580604 (-) True LOC103043231
XM_022670343.1 mRNA downstream 730265 20562271 ~ 20568195 (-) True LOC103047390
XM_007230972.3 mRNA downstream 742130 20541864 ~ 20556330 (-) True pigf
XM_022670339.1 mRNA downstream 906254 20317213 ~ 20392206 (-) False LOC103047709
XM_022670348.1 mRNA upstream 355072 21655617 ~ 21669948 (-) False LOC103044518
XM_022670350.1 mRNA upstream 355072 21655617 ~ 21669931 (-) False LOC103044518
XM_022670349.1 mRNA upstream 355072 21655617 ~ 21669786 (-) True LOC103044518
XM_007250120.3 mRNA upstream 530294 21830839 ~ 21870274 (-) True LOC103047279
XM_007250121.3 mRNA upstream 572944 21873489 ~ 21885441 (-) True narf
TU72277 other downstream 479051 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 510842 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 608038 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 995832 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 1448110 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 1546131 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1790761 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 3040855 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 3486649 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 4265729 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile