RNA id: TU72449


Basic Information

Item Value
RNA id TU72449
length 503
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G53747
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21607244 ~ 21607746 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagacagagagagagacagagagagagagacagagagactttTTGACTTTTAACTTTCTTTATTAGAACCAAGTCAAACCAAGTCAATATGACAAGTTAGACAATCCTAAAAATGGATTGAAACagatttttacaataaaataaattaaaacatgaaataaaaaatacagcttaCTGTAATTCTGGGGCAAAAAAGAGTTCACCCTCCTCAACCAGGCAAACTGCCTCCCCAAAGCACCATATTAACATAAAAGCATCCAGGTCATTCATGCCTTTATAATAGTTAAAATCAATTTTTATCCTAGCCTTAACCATCCTCAGGAAGATTGGCACAGCATCACAGTCTACATTTTGCTCAATTTTGTTCTTCCTGCTCATGTAAATAGCCATCTTCGCTTGTCCAAGGATAAAATTGATCAGTTGGCACTTGTACCTTTGGCTCCTGGCATATTTAAAACCAAGTATAAAACTCTGGGGTGTAAAATTTTCATTAAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72447 lncRNA downstream 154 21606779 ~ 21607090 (-) True G53745
TU72445 lncRNA downstream 154 21606788 ~ 21607090 (-) False G53745
TU72439 lncRNA downstream 119825 21487145 ~ 21487419 (-) True G53740
TU72432 lncRNA downstream 177140 21429775 ~ 21430104 (-) True G53733
TU72423 lncRNA downstream 273464 21333061 ~ 21333780 (-) True G53725
TU72455 lncRNA upstream 27015 21634761 ~ 21637166 (-) False G53751
TU72453 lncRNA upstream 27376 21635122 ~ 21637166 (-) True G53751
TU72454 lncRNA upstream 28042 21635788 ~ 21637166 (-) False G53751
TU72457 lncRNA upstream 28699 21636445 ~ 21636821 (-) True G53752
TU72459 lncRNA upstream 32621 21640367 ~ 21641528 (-) True G53754
XM_022670347.1 mRNA downstream 222359 20984459 ~ 21384885 (-) True LOC103027095
XM_007230971.3 mRNA downstream 1026640 20572412 ~ 20580604 (-) True LOC103043231
XM_022670343.1 mRNA downstream 1039049 20562271 ~ 20568195 (-) True LOC103047390
XM_007230972.3 mRNA downstream 1050914 20541864 ~ 20556330 (-) True pigf
XM_022670340.1 mRNA downstream 1215049 20342910 ~ 20392195 (-) False LOC103047709
XM_022670348.1 mRNA upstream 47871 21655617 ~ 21669948 (-) False LOC103044518
XM_022670350.1 mRNA upstream 47871 21655617 ~ 21669931 (-) False LOC103044518
XM_022670349.1 mRNA upstream 47871 21655617 ~ 21669786 (-) True LOC103044518
XM_007250120.3 mRNA upstream 223093 21830839 ~ 21870274 (-) True LOC103047279
XM_007250121.3 mRNA upstream 265743 21873489 ~ 21885441 (-) True narf
TU72277 other downstream 787835 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 819626 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 916822 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1304616 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 1756894 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 1238930 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1483560 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2733654 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 3179448 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3958528 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile