RNA id: TU72584


Basic Information

Item Value
RNA id TU72584
length 2716
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G53838
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21739449 ~ 21744033 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGAAACTGAACGAGTTTGAAACTTATTGATATGTAAAAATCcttgaaataaatattacatagtGGGTTGCTGAGTCAAGCCCAGAGCAATGTGCTGAAGTGCAGCCAACTCTGCCACCCTCTGCTGAGCTGCGGAACTGTTGCTAGGCAGGAGCTTTCCATCCAGATAGTCAGCCAGAGCCTGAAGGACATACACAAGCTCAGAGTCCATTCTGACTGTACACTGAGAAGAATTAGAGTTTGGTGAAGAtggactaaaaaatattttagggtgttttcacacttgaaAGTCTAGGCCAGAGTTCAAACCGaggtttatgtgtttgttaaattatatatttgacATGAGCCaagatgctctttgctatcttacacccagtcaaCACTCGATTTTCACACTTTGTGCCTGCATTGTTAAAATatcatcagagtttaggaataaatctacactgatgggtgtggtggtctggaagtgagtggtggtggtgataaaaaacacaggagctccactgactgaaataaatttAGACAACAGTCAGTCGTCAGAGTTCATTCCTACAGGgcgcaaacctgacttttaactcagaataatacacagaataacaaataaaataacattactgttcccttaaatgagctgctggtgtatcttcacagcgtgaacgtgcaggtcagtattcctctgctgagacgcacaaagtgCCGCACTGTTTAGATATGAACGTGCCTAAATCAGAGTGCACCtgccttttaaagggaatggtaaGTGATgcactgattggttcatttcacgttacacccaaaacacacccataattaattaagagaattagtacatgacttttgcatgttttgagctgtgcaagacATATTTTTGGTGCCcttacaataccaaagacacactgacacgccctaaatccagctgtgcaatCTGCAAGTGACTGGTACGCTATAGATTGCTGAAATAGGGGCCGTAATCTGGTTAGATTTGGTTTaaaactgcagtttagtgagcttTAAAAATCTACCTATGTCCTGTCAGCATCATCTGCATGAGTTGCATCTCCTTATAGTTTACACTAAAAGCCTTTTTCCACCAATCTGATCTAGTTCATGCACCTAAGTTTAAACTATTTGGcgcatttccaccaacaaaaataGGTTCTGGAACCTTAAAAATTAAATTCCAGCTGGAACCAAAAATAAAGGGTTCTTCAGCATAAACCAATGGCCTCAAACACAGTCTGTTTAATACATGCCTGAACAAATCCAGTTCAAGAACCAAAGTTATTTTGGTCAAAAAGCTCTGTTATTGGTTTGCAAAAAGTTGTCAATTCAGAGTGTTGCAGTTAGCATGCATGTGGGTTCATGCAGTGTAACAGAAAACCCTCagattacttttatttctacttGAAAATaggggttaatctacagttacaggaGGTACAGTACATATATGGACTTGCACCTATACAGCTGTGTGACGTGTGTGTTTGCAATTACACAAGGATCATCGGATTTTGCGACAACATCtgtcctttttcttcttctattgtttaatgggtgatgatagtctgcctcaacttcctgtaatagGTCCAAAAACCTGAACCATCTAGGAAAGAGTTTTCACTCTGCAAAAAAACTGCACCATGgtatgggcaaaaaaaaatcctgttaatATTTTGCACCATGGTCTTGGAATAAACTTCAAAGCAAATTACAGCTTAATGAGTTGGTttccttaaagcagcactaggtaggatttccttgatttttgatctttttaaagaagtaaaattacagcttgaaactcactgcagcgctgcattgaggtgtaataggaggaatagcggtgctctcgtgtctgtgccggagctcctctgagcttaaaccagactctgtaagtttttcgaggcggccgcgaccaacgctcgcgagaactgcgacctgctttccgacctttagttctaacagttctacatgGACTATTGGTTCaatctttacaaactaacatacagacactctggcagaagctggaaagagaccgaatatgtctgtgaaagacagaaaatgagaaagagaaactaatccgcctgaaacatttactacactctacaactgtaggggaagctcacaagcacaaaatctcaatcctacctagtggagctttaagtgaGATTAAAACCTTGGTAAAGAGTTCTCTGATGGAAACATGCAAATGCTACTCGTAAATTTATTCTCCCtctgttttgttcttttatgttgatttatgtttattttaattgcgTTTGTGTAAACACTTTGTTGTAATTCTCTGTGACTGGACATGGTGTGCCGTCTTGGCCAGATCTCCCTcgaaaaaaagagattttgatCTCAATGGAAtttcctggttaaataaagggttaaataaataagGAGCTGGGCCACGGCCATCTCCTTTTTAATAGTTGGACCAAGTTTTGGATCTTTGGTCTGAACCGGACCaaacaaggtacagtaggtgtgaTAGAAGGTCTAAAATGCTACAAAaacacattctttaaaaaaacagcaaacagtaCCAGCTGGTAATGAAACTCCACATAGAGGTCATTGTCAAAGTGCAGGGGGTGCTGCCAGACGAGTCGATGGAAAGAGAGGATGATTGAGCCATCGTCAAGCAGGAAGTCAAACAGATACTCATTAGGGTGGATGGGACGCACTTCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72462 lncRNA downstream 85754 21653436 ~ 21653695 (-) True G53757
TU72459 lncRNA downstream 97921 21640367 ~ 21641528 (-) True G53754
TU72455 lncRNA downstream 102283 21634761 ~ 21637166 (-) False G53751
TU72599 lncRNA upstream 48535 21792568 ~ 21798437 (-) True G53850
TU72605 lncRNA upstream 54426 21798459 ~ 21808456 (-) False G53851
TU72606 lncRNA upstream 54426 21798459 ~ 21807133 (-) True G53851
TU72607 lncRNA upstream 54426 21798459 ~ 21807133 (-) False G53851
TU72602 lncRNA upstream 60496 21804529 ~ 21808456 (-) False G53851
XM_022670348.1 mRNA downstream 69501 21655617 ~ 21669948 (-) False LOC103044518
XM_022670350.1 mRNA downstream 69518 21655617 ~ 21669931 (-) False LOC103044518
XM_022670349.1 mRNA downstream 69663 21655617 ~ 21669786 (-) True LOC103044518
XM_022670347.1 mRNA downstream 354564 20984459 ~ 21384885 (-) True LOC103027095
XM_007230971.3 mRNA downstream 1158845 20572412 ~ 20580604 (-) True LOC103043231
XM_007250120.3 mRNA upstream 86806 21830839 ~ 21870274 (-) True LOC103047279
XM_007250121.3 mRNA upstream 129456 21873489 ~ 21885441 (-) True narf
XM_007250125.3 mRNA upstream 175496 21919529 ~ 21921617 (-) True ddit4
XM_007250124.3 mRNA upstream 189236 21933269 ~ 21938448 (-) True anapc16
XM_007250129.3 mRNA upstream 302463 22046496 ~ 22054088 (-) True LOC103023380
TU72277 other downstream 920040 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 951831 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 1049027 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1436821 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 1889099 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 1102643 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1347273 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2597367 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 3043161 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3822241 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile