RNA id: TU72606


Basic Information

Item Value
RNA id TU72606
length 1814
lncRNA type inter_gene
GC content 0.51
exon number 9
gene id G53851
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21798459 ~ 21808456 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTccactttttttccccaatttgcTTTCATCTTCTGTTCTTCTCCTTTCTTCCACTGCAGCTTGTTCACAAATCTCCTTCGTCCCTTCACTCGCGTTTTCAGCATGGCccagttcattttttttatcaactgCCTGAGAATCCTTACTGTTCCCTTCAGCGAAAGCCTTAGATGTTGACTTGTGTGAGCCAACAAACAGTACATCACTTCCAGTACTGCTGCAAATACTggagtcagacagacagacaacacTGCAATCATACTTCTTCTGAAGCGATTGGTCAGATTCAGTCGCTTCAGGTGCATCTGCCAACAGCATCTCAGCATCGTCGGTAGTCTCTGAGAAGTCCGAGCTGAGACAGACTACAGAGGGGGAGGTCACAGAGGTCGTGTCTTCGCAGTCGGTCGCAGAGGAGGACGAGAAGGATGGATAGGAGGATGACGAACTGGTGATGGACGATGCAGGCATGGTAGTGTTGAGTGAAGAGTCCATAGAAGAACCCTTAGAGGACATGAGGTAGTACCAAACACCTCGTACTCCATCACTAGAgttactagtgctgctgctgctgctgtcgccGCCATCAGTgctgtaacacacactctcactgcaaGTGCTCAGAGAAGACTCCAGGCCCATCGGCTCTGAAGAAGAAGCCGTTACACGTCTGTGGTCACATGTCTCAAGAAACACATCATCACAGAGGGTGACAGAACCTAGTGCTGATGCCACTGCATTTACAGGGGATGAAGAGGAAGCTGTGGATGtggatgctgatgatgatgctgatgagaTGTCTGAGTAGATTAATGGATTCTGAACAGGCTTAGTGCCAGTGCCTGGCGGATCAGGGTCCACTGGACTCAAAGCAGAGCTGGACAGCTCTATGACTTGGCTGACCAGCTCACCCAGGCTCTGAGATGGAGTGGACTGGATAAGGGAGGAGGTAGACGGCACAAATCTGTCAGGAACTGAGGGAATCTGGTCCACATCGGCTCGCTCTACTTCCACAGAGCTCAGGCTGGCTGCAGAAGACCACGTCTGATGCTGTCTCACCCATGTAGGTGTAGAACCTGACAAGCTGATGCAGGACATACTTAATTCTGATGTTGCCCCGGTCATGTCATCCAACATCTTCTGCAGAGATCTGGGCTCATCTCCATCTCTCAGCTCACTGCCCTCATCTTGATGGCTCACTGCATGGCCCAACCTGATCAACTCCTCACCCAGGTCTACAATCTTTCCTTGCCGGTTATCATACAGCTTCACATTGGGCCAGGAGGACATCTCTGAGTGAGAGTAACTGCACAGTTTGGCCAGTAGAGGCTTCCACTGTGCACAGAACGTCATTCGATCAAAATCATCCAGAGCCTCCTCTGTCCAGACCTCTCCTAATGGACACACCCCTGCCAGACTACACTCGATAGCTTGGAAGGGCAAGCTCAGGAAATCACTCCTCATGCTGCATAGCTGATCTCGTGGCAGCTCTCCATTGTCCCCAAAGTCCACGTAGTACAGGTCAACCAGACCAGAGCTTAGAATTCCTAACACTCGTGCCCGGTTCCACGTGCCGTGGTCCCGATAAGGAGCAGCCACAATGTCCCCAACAACTATGGCCTCCACTCTGTGCTCCTGTAAAGTGTCGGCACTGTAGAAACGGCTCATCTCAGCCGTCAGTTTGTCTAGTTGAAGAGATCGAACTCCTACAATCTGGATCCAAAAGTGCTGGGGGTTCTCTGATGCAGACACGTACACTTCTAAATGTTCACCAGGCTGGAAGCTCAGGTCTGGACTGGGAATTTCAAACTTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72599 lncRNA downstream 22 21792568 ~ 21798437 (-) True G53850
TU72584 lncRNA downstream 54426 21739449 ~ 21744033 (-) True G53838
TU72462 lncRNA downstream 144764 21653436 ~ 21653695 (-) True G53757
TU72459 lncRNA downstream 156931 21640367 ~ 21641528 (-) True G53754
TU72457 lncRNA downstream 161638 21636445 ~ 21636821 (-) True G53752
TU72620 lncRNA upstream 79421 21886554 ~ 21888629 (-) True G53858
TU72629 lncRNA upstream 86293 21893426 ~ 21897580 (-) True G53861
TU72614 lncRNA upstream 100552 21907685 ~ 21916759 (-) False G53856
TU72615 lncRNA upstream 100552 21907685 ~ 21916759 (-) False G53856
TU72617 lncRNA upstream 100552 21907685 ~ 21916759 (-) True G53856
XM_022670348.1 mRNA downstream 128511 21655617 ~ 21669948 (-) False LOC103044518
XM_022670350.1 mRNA downstream 128528 21655617 ~ 21669931 (-) False LOC103044518
XM_022670349.1 mRNA downstream 128673 21655617 ~ 21669786 (-) True LOC103044518
XM_022670347.1 mRNA downstream 413574 20984459 ~ 21384885 (-) True LOC103027095
XM_007230971.3 mRNA downstream 1217855 20572412 ~ 20580604 (-) True LOC103043231
XM_007250120.3 mRNA upstream 23706 21830839 ~ 21870274 (-) True LOC103047279
XM_007250121.3 mRNA upstream 66356 21873489 ~ 21885441 (-) True narf
XM_007250125.3 mRNA upstream 112396 21919529 ~ 21921617 (-) True ddit4
XM_007250124.3 mRNA upstream 126136 21933269 ~ 21938448 (-) True anapc16
XM_007250129.3 mRNA upstream 239363 22046496 ~ 22054088 (-) True LOC103023380
TU72277 other downstream 979050 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 1010841 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 1108037 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1495831 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 1948109 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 1039543 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1284173 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2534267 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 2980061 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3759141 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile