RNA id: TU72618


Basic Information

Item Value
RNA id TU72618
length 1420
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G53856
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21907685 ~ 21916759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGAGTGGCACGTAggatttttattgttctttcaATGTGCAGAACAATCATTGCAACACAATTGCCTTTGTCAGCAATGAAAGACTTCATGATagttgaaaaatataaaactcgGTACTTCAAAAAAGTCCAgatctttaaataaatacagcagccACTTTAAACTCTAGTGTCCAAGATAAGATTATGGAGTGCAAATCTTCAACAGTTTAAGCTTATTAACTATACATAAATAACCTAATCAATAAAATCTCCCTGCTTAGATACATCTCAAATGtacaattataaattaataaaattcgaCTAGATCATGATCTACGCTGTTAAAAGTAGAGGTTTCTTGTGGAGGAACCCCATACGGTGCTTTGATAAACCTTTTTCTGAAGGTTTATCAAAGCATCAAAGCAACTAAACCCATAAGAGCTCAGTCCCATTAAACATTGAATCAGACAAAAAAAGTTCCTTATTGTGGGCAGAcaagtgtaaatattttagggTTTAAATCCCAATATAACATAAATGGAAACAACaagttaataataatgaattgttctagaaatcaggttAGAACTAGTTATAGGAACCACTAAACCCTTcaataataaatttgattttttttaatttatggaaTAGAGCTGTAGAaactaaaaatacacttttaaaagaagCTAGGTTTacctccagcactaacccagcactcctacattctgttaataaggtcagatgaaaaaacacacatttacacactgtcctgttTTAATGCTCTCAGGACATTCAGTATATGTTACTTAGGGAATTCATGAGTTAAAATGACGgacacagtgctgtaaaaaacttaattttaaatattttaaagggtctgtgacacatATGTAACCACTGCCTCTTTTGGTTATGGGGTTCCTCCACAGGTTCAACCTGAAGAACCTCAAAAGGTTCCTCAAGAAACTTGGATTGGATAGCAACAAAATACACATGTAGAATGAACGCTCTGGCTGAAGTTTCCTTCAGTCATCTGGGTTGTAAAATAAACCGTGAAAATCCATTGCTTGAGACGTAGCCTAGGTTTAACTATGGATCAGACAGCCAGGGGAAGACCCTGAGCCGTACAGTGTAATATGACTATTAATGCCGGACAGTAATGGATCCTCTTCAactaacactcacacacactcacacactcacacactcacacactcacacacatacatttATGTACGCACACAAACCAGCAGTCAGTTTGAAGTCTCCTTCCTTTGGTTGATTGTTGATTTTCTGTTACCAGTGTACCACCGTTCTTTTTGACATGAGTGGGAAGATTTTTTTAGACCTATAAAAAGAAGAACAATGAACAGGGTTAAAATGAGATTAACAGTCCCTagttgcattttattttgtgtacaaTGACATGCTAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72629 lncRNA downstream 17708 21893426 ~ 21897580 (-) True G53861
TU72620 lncRNA downstream 26659 21886554 ~ 21888629 (-) True G53858
TU72602 lncRNA downstream 106832 21804529 ~ 21808456 (-) False G53851
TU72606 lncRNA downstream 108155 21798459 ~ 21807133 (-) True G53851
TU72638 lncRNA upstream 23843 21940602 ~ 21941350 (-) True G53868
TU72708 lncRNA upstream 240230 22156989 ~ 22158000 (-) True G53918
TU72715 lncRNA upstream 281489 22198248 ~ 22298487 (-) True G53924
TU72717 lncRNA upstream 400635 22317394 ~ 22409390 (-) True G53926
TU72719 lncRNA upstream 400635 22317394 ~ 22449619 (-) False G53926
XM_007250121.3 mRNA downstream 29847 21873489 ~ 21885441 (-) True narf
XM_007250120.3 mRNA downstream 45014 21830839 ~ 21870274 (-) True LOC103047279
XM_022670348.1 mRNA downstream 245340 21655617 ~ 21669948 (-) False LOC103044518
XM_007250125.3 mRNA upstream 2770 21919529 ~ 21921617 (-) True ddit4
XM_007250124.3 mRNA upstream 16510 21933269 ~ 21938448 (-) True anapc16
XM_007250129.3 mRNA upstream 129737 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA upstream 129737 22046496 ~ 22053903 (-) False LOC103023380
XM_007250130.3 mRNA upstream 140214 22056973 ~ 22065003 (-) True LOC103023701
TU72277 other downstream 1095879 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 1127670 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 1224866 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1612660 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 2064938 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 929917 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1174547 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2424641 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 2870435 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3649515 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile