RNA id: TU72629


Basic Information

Item Value
RNA id TU72629
length 530
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G53861
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21893426 ~ 21897580 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAAAGCTTCTGTAGCTCCTGGTGCATGGTTTTTATCAGGATGGAACTTCAGTGCTAGCTTCCTGTACGCTTTTTTAAGGTCATCATCCGACGCGTCTTTCTGCACTCCAAGAATCTCATAGtagtttttacactgttttattCTTTTCACAGCATCCACCTGATCTGTAGTGTAAGGTTTGGCTGAGTCTGAGCTTCTGTCCTCTGGAGCCCTGTGATGTTCAGACCCGTCCTCTGGAGCTTCTGTTCCAGCTGTAGAGCCGTTCTGAGAGGAGGCATGTTCGTTCTGCTCAAGTGACTTCAAAAGCACGCTCGCTCGGTCGGTTGGGAAGAGTTTCTGCGCTTTATCCAGAAACCGCCGCGCTTCTCCGCCTGGTTATTTCTGATCGCTTTCACTGCGATCTCTATACAGCGCTCCGCCTCGTCCTTATTCCCCTCCATCGCCGAGTGTAACAATAAACcctacagatacagatacagcagatACAGCGGCTACAGCTacaccaataaacacacacCGCATAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72620 lncRNA downstream 4797 21886554 ~ 21888629 (-) True G53858
TU72605 lncRNA downstream 84970 21798459 ~ 21808456 (-) False G53851
TU72602 lncRNA downstream 84970 21804529 ~ 21808456 (-) False G53851
TU72606 lncRNA downstream 86293 21798459 ~ 21807133 (-) True G53851
TU72607 lncRNA downstream 86293 21798459 ~ 21807133 (-) False G53851
TU72614 lncRNA upstream 10105 21907685 ~ 21916759 (-) False G53856
TU72615 lncRNA upstream 10105 21907685 ~ 21916759 (-) False G53856
TU72617 lncRNA upstream 10105 21907685 ~ 21916759 (-) True G53856
TU72613 lncRNA upstream 17708 21915288 ~ 21916759 (-) False G53856
TU72618 lncRNA upstream 17708 21915288 ~ 21916759 (-) False G53856
XM_007250121.3 mRNA downstream 7985 21873489 ~ 21885441 (-) True narf
XM_007250120.3 mRNA downstream 23152 21830839 ~ 21870274 (-) True LOC103047279
XM_022670348.1 mRNA downstream 223478 21655617 ~ 21669948 (-) False LOC103044518
XM_007250125.3 mRNA upstream 21949 21919529 ~ 21921617 (-) True ddit4
XM_007250124.3 mRNA upstream 35689 21933269 ~ 21938448 (-) True anapc16
XM_007250129.3 mRNA upstream 148916 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA upstream 148916 22046496 ~ 22053903 (-) False LOC103023380
XM_007250130.3 mRNA upstream 159393 22056973 ~ 22065003 (-) True LOC103023701
TU72277 other downstream 1074017 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 1105808 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 1203004 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1590798 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 2043076 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 949096 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1193726 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2443820 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 2889614 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3668694 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile