RNA id: TU72638



Basic Information


Item Value
RNA id TU72638
length 408
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G53868
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21940602 ~ 21941350 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CTTGTAAAGAACACTTGGAACATCAATGGCACATCGAAATCCCTTTTCTGTCTGTTCAATGTTGTTAGTGTCACAAGGCTCATCCATGCACTGGTCAGTAACTGGTCCAGAGTATGAAAAatcctcttcttcttcatcctcaTAATGCTCCTCTTTAATGAGattttttctgtaaatccttCCATTGATGTTAATCAGTGCTGGCCGCAAAATGTCCATTGTTACCTAGATCTAAAACTGAATAAACACTTAATTTACCAACATTTTAATAGTTATATTCAAGAACCATAAATATACATCCTGGATAGACAATAGACAACACATGACCAATTCCATGTAATTCCACATATCTACACAGCAATTCTGTCTATTAAAAAGTAGGTCTGGACAATATGGTGAAAATGACCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72614 lncRNA downstream 23843 21907685 ~ 21916759 (-) False G53856
TU72615 lncRNA downstream 23843 21907685 ~ 21916759 (-) False G53856
TU72617 lncRNA downstream 23843 21907685 ~ 21916759 (-) True G53856
TU72613 lncRNA downstream 23843 21915288 ~ 21916759 (-) False G53856
TU72618 lncRNA downstream 23843 21915288 ~ 21916759 (-) False G53856
TU72708 lncRNA upstream 215639 22156989 ~ 22158000 (-) True G53918
TU72715 lncRNA upstream 256898 22198248 ~ 22298487 (-) True G53924
TU72717 lncRNA upstream 376044 22317394 ~ 22409390 (-) True G53926
TU72719 lncRNA upstream 376044 22317394 ~ 22449619 (-) False G53926
TU72726 lncRNA upstream 600820 22542170 ~ 22542524 (-) True G53932
XM_007250124.3 mRNA downstream 2154 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 18985 21919529 ~ 21921617 (-) True ddit4
XM_007250121.3 mRNA downstream 55161 21873489 ~ 21885441 (-) True narf
XM_007250120.3 mRNA downstream 70328 21830839 ~ 21870274 (-) True LOC103047279
XM_022670348.1 mRNA downstream 270654 21655617 ~ 21669948 (-) False LOC103044518
XM_007250129.3 mRNA upstream 105146 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA upstream 105146 22046496 ~ 22053903 (-) False LOC103023380
XM_007250130.3 mRNA upstream 115623 22056973 ~ 22065003 (-) True LOC103023701
XM_022670368.1 mRNA upstream 2552965 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 2844901 24786251 ~ 24920590 (-) False svil
TU72277 other downstream 1121193 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 1152984 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 1250180 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1637974 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 2090252 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 905326 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1149956 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2400050 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 2845844 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3624924 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile