RNA id: TU72715


Basic Information

Item Value
RNA id TU72715
length 1978
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G53924
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 22198248 ~ 22298487 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAAAACTGGTAATTACTCCCCTGAGTCTGAGAGATCACTTTGCTCTTTCTCAGTTATCGGGCTGTTGTTTTAGATGTAAGCGCTACTCAGTTTAGGACAGTAATGAGGTTAGTCTGGTTTTACATTTACAAGAATGAGAAATAAGAACTGATGTTACTCAAGACAACCACAGAtttgccaaatgtcatgggacatttGTAGCATATCCCATGCTTTCAGGGCATCCGAAGACTCAATTAATACAAATGTAGATGTTACTCAAAAAAGCTTTTACATAAAAGACAGAAACACTGTTAATATGATGCGGtgtacaaaaaaagacaaagtgcATCTGAaacctgcattaaaaataaatttctcCAGTGTAAAGCTCTAAGGAAATTCATCTTTGCTACAACAGTATGATAAAACACCTCACACACGCAGAGACAGAGCTGCTAAACAAAACGGCATCATATTACCATCATGCGTTCAAGGCCTTGCTCGCGAGTAATCacctttttaataattaaaatggaAACGGAAAGGGAGTCCTCTCACTTCAAAGTCTTCCGCGCTGCCCCAAGGCCATGTTTGGGTTTCTGACAGATCTGGAGTGCTACATGCGTCTGAGCGGAGTGCACGGGAACTACATTCTCAAGCGTTTGTCTCAATCATTTTGGACATTTGAACTTCTCCATAGGAAGGCCACCGGGCAAgttagaaagaaaaagaaaagaaaaaataataaacggAGTCAAAAAAGCTAGACAAGACACTGAACAAGGGAATAGAAGTTCTTAAATGTGAGTTTAAATCTTCTCGCTTTGAGACCCTACTGGTCTGTAGAGAGGTCCATGCCATTATCAGGCCTCAGTCTTTGGAGAGCTGGACGTCGTTGAAGGGCCTGAAACGCTGGTGTGCTGGTGTTCGAGGAGAGGAGTCTGCGGAGCTCCTCTGTTGCAGCAGAGGCAGAGGAAGCTCAGCATGCCTGCGAGGCAGGCCACCGTTGGTAGGGTTGTGTGCTGGTATATCTCAGCAGCTGGGCTGTGGTACTCTGACGAGGCCAAGAAAACACCGTCGAGGCTGAGCGATGCAGCTAGAATGAAGTTCCTCCCTCgttagctctgtgtgtgtgtgcttgcagacaatagttttttttttataaaaaaagaaaaaagacgtCTAGACTTTCTTGATTTGTTGTGTATCTATATACATTAGATCTAACAATAGATCTCCAGACTACAGACACCAAAAGCACCTTTTCGGTgttgatgtgatgtgatgtgttttttagtgtgtgtgtgtgtgtgtgtgtgtgtggctgtgtgtgtaagtattTGAGTGGTTGGGTTGCCTGCTTTGGTTCCATTGCGGTTCCTGATGGCATAAGGTCTTTCCCAtgagttccttttttttttgttttgacttAATTTGTAacaaactcaacacacaccGCATCAGGACAAAAGGACGGTGAAAGATTGAGACACAGGTTTGAACCACTGTTCACCTGTCTACCAAGGCCAGTGAATGACAAATACATGAAGTAGTCCATAGAGTGTGCAACCTTCTGTATGTGAAttccaataataaaataaaatctctctgaaaattaacaaaaaaacaacaaaaaacacacaatgtcCGTAAAAGCTGTAGGTAAGTCAGCTGAGACACACACAATGCCATCATGCTGGCTGTTTCAGAGCCTGTGCCAACTCCAGTGGGCCAACGGGCTCTCGCTGGTGTGCGTATCCTATAGGGGCACACGTTATCTGGAGTGAGGAGAGTGGCACATGAACAGTGGGGGACTGAGAgggagcgaaagagagagagagagagacagggagagcaGAAAGGGCTCACAGCTGGTGCACAATGCTGTCAGGGTGACTGAAGGAAGCCGGGCCGTCCTGACGAAGCCGCTGCCACTGGAAGGTGGTGCTGAGGGAGcctacctcctcctcctcgttcTCCTGCTCTTTAGCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72708 lncRNA downstream 40248 22156989 ~ 22158000 (-) True G53918
TU72638 lncRNA downstream 256898 21940602 ~ 21941350 (-) True G53868
TU72615 lncRNA downstream 281489 21907685 ~ 21916759 (-) False G53856
TU72717 lncRNA upstream 18907 22317394 ~ 22409390 (-) True G53926
TU72719 lncRNA upstream 18907 22317394 ~ 22449619 (-) False G53926
TU72726 lncRNA upstream 243683 22542170 ~ 22542524 (-) True G53932
TU72727 lncRNA upstream 251586 22550073 ~ 22550295 (-) True G53933
TU72737 lncRNA upstream 404429 22702916 ~ 22707943 (-) True G53941
XM_007250130.3 mRNA downstream 133245 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 144160 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 144345 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 259800 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 276631 21919529 ~ 21921617 (-) True ddit4
XM_022670368.1 mRNA upstream 2195828 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 2487764 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 2487764 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 2487764 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 2487764 24786251 ~ 24878021 (-) False svil
TU72277 other downstream 1378839 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 1410630 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 1507826 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1895620 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 2347898 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 548189 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 792819 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2042913 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 2488707 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3267787 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile