RNA id: TU72780


Basic Information

Item Value
RNA id TU72780
length 669
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G53976
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 22858391 ~ 22885934 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCTGAACAATAGCCCCATGATCATTCTCCTGGCTCCCTAGAAGACTTACGATTActgtgtcatccgcaaactttaAAATGTGTCTATTactgtcacgtctggtgctgttagctcctctgtcccttccacaccaagctctaacggaggttctcaggttaacaactacactacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttcctcctggaagtcccgaatactgattactggcactataaaggtgcacgccaaacagactaccacgccgcgtattgtaggttatcctcgtacaaagcgttacttatctcttgtctcagtttactttgtgtatgaccttgctttttgtttctcgacgccgattcttgcctctgcctttgatattggattgtttgtgtatgacctggactgtactttcaccaccgcctcttggattatctctgatactggattgtttgtgtatgaactctggactgtctctcgtttatggtatggttttgtcttcattgctctgtctactggtgattacccttatttctgtatcgaccctgattacatctgtttattattataataaacatactttgtttttatcagtatctgcgcttgtctgctattctgttctgaccatgacacaCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72761 lncRNA downstream 4117 22769469 ~ 22854274 (-) True G53961
TU72745 lncRNA downstream 90124 22712933 ~ 22768267 (-) True G53945
XR_002650044.1 lncRNA downstream 90385 22767050 ~ 22768006 (-) True LOC111192635
TU72737 lncRNA downstream 150448 22702916 ~ 22707943 (-) True G53941
TU72727 lncRNA downstream 308096 22550073 ~ 22550295 (-) True G53933
TU72786 lncRNA upstream 21892 22907826 ~ 22908049 (-) True G53980
TU72788 lncRNA upstream 57836 22943770 ~ 22943981 (-) True G53982
TU72799 lncRNA upstream 78067 22964001 ~ 22971704 (-) True G53986
XR_002650047.1 lncRNA upstream 177970 23063904 ~ 23255571 (-) False LOC111192637
XR_002650046.1 lncRNA upstream 177970 23063904 ~ 23255571 (-) True LOC111192637
XM_007250130.3 mRNA downstream 793388 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 804303 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 804488 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 919943 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 936774 21919529 ~ 21921617 (-) True ddit4
XM_022670368.1 mRNA upstream 1608381 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 1900317 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 1900317 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 1900317 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 1900317 24786251 ~ 24878021 (-) False svil
XR_002650112.1 other downstream 11054 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 2038982 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 2070773 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 2167969 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 2555763 20302535 ~ 20302628 (-) True trnai-uau_7
TU72809 other upstream 205372 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 1455466 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 1901260 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 2680340 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 2681207 25567141 ~ 25567213 (-) True trnak-uuu_1