RNA id: TU72799


Basic Information

Item Value
RNA id TU72799
length 1269
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G53986
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 22964001 ~ 22971704 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAGTTTAACAaagtttattaaatttaaaattaaggggacaatgcaaaaaaaaagatcaccATTCGCTCAATAATAATTTTCAACACAGGGCTAGCCCAATCACTAAAATCCCacccaaataacaaaaaaactaacaacaataaaaatagaactaCCAACTAAAGGATACAACCCaacacaagaaaaagaaaaacaaacagccaaaaataaataatgcaacacAACCCACAAAAATCCTCCTTTTGATAATAATACTCCAAATATTCTACGAGGCTGGTGACTCTCCTGTAGGCTACCCAGGACAGTAGCTAATTTCCTACAGTTTCCCCCATACCATAAGCGAGGCTATACAGTTGCTCTCAATAGATCCTAGCAACCCGAGAGTAGtcagtataattataatatcGGAAATGATTACTCCAACGAATAACCAATTTatcaaacaaaagaacaaaaaaaaaaaaaaaaaaaaagagaaaaacaaattaaatctaaaccaacataaatattataatcCCTTCCCACACCATATATCCCCCTTACTAAAATGTAGGTTCTGGTTAGGTACAGCAGCAGTCCAATAAAATCTGTAATGGCAGCAGGAACGCGGCTCACGCACGTGGCGGCGCGGCTCTCACACGTGACACAGCAATCCACACTCGCTCTCCTCCACGCTGACCCCACAAGTCTCCCACAGACGAGGTAGCTGTAGCAAACAGAAAGGAGAGCAGTATCCTGGCCCACACACAAGCTACGAATCACTCTAAATCCACAAATGATCTCAGTCAGCCACCAGCAGAAGCAAATAGTACACCCAAAGGAATATACTCACAATTAGCCCGGGAGTCGGGTAGTCCAAACTCCCAGGACGTATATTCCAAGCCCGGGTGAAATCCCACAGCGGTAGCCTCGCGCTAGCTCCTCACGCTGCCTCAGCTCCCCCGCTTCCTGCTGGCGCCGCTCGCTCCGCAGCTCCCCTGTGTAGGGCTCGTCGGCGCCGGTACGGCCGGGTCCTTCACGCCACCTCACCGCTACCGCTCGCCTACTTCGTGTCTGCCGCGCGCCGCTTCACATCCACGCCACGGATGGTTCCCGTTCCCGTGCTCTCTCCTCCATAGTGCTGCAGCTGTGTTTATTCCGGAAGCAGCCCGTAGTACCGCCCCTCTACCGTCCCCATTGGTCACACTTACGGCAGCCATGCAGACTGGTTGGTCCAGTCATCTGTCCATCAACGTGAGCTGCCGCTCAGGTTCCGGGGTAATCAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72788 lncRNA downstream 20020 22943770 ~ 22943981 (-) True G53982
TU72786 lncRNA downstream 55952 22907826 ~ 22908049 (-) True G53980
TU72778 lncRNA downstream 78067 22858391 ~ 22885934 (-) True G53976
XR_002650047.1 lncRNA upstream 92200 23063904 ~ 23255571 (-) False LOC111192637
XR_002650046.1 lncRNA upstream 92200 23063904 ~ 23255571 (-) True LOC111192637
XR_002650045.1 lncRNA upstream 92200 23063904 ~ 23254789 (-) False LOC111192637
TU72812 lncRNA upstream 156010 23127714 ~ 23128114 (-) True G53999
TU72838 lncRNA upstream 305130 23276834 ~ 23277253 (-) True G54021
XM_007250130.3 mRNA downstream 898998 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 909913 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 910098 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 1025553 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 1042384 21919529 ~ 21921617 (-) True ddit4
XM_022670368.1 mRNA upstream 1522611 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 1814547 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 1814547 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 1814547 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 1814547 24786251 ~ 24878021 (-) False svil
XR_002650112.1 other downstream 116664 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 2144592 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 2176383 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 2273579 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 2661373 20302535 ~ 20302628 (-) True trnai-uau_7
TU72809 other upstream 119602 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 1369696 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 1815490 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 2594570 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 2595437 25567141 ~ 25567213 (-) True trnak-uuu_1

Expression Profile