RNA id: TU72849


Basic Information

Item Value
RNA id TU72849
length 1617
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G54032
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23441450 ~ 23443066 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccaagctgtgtttatttaagaaaactgtGTGTATTACATGACTCAACTGTAGTAGCTCATGTTTAGCcctaaactgattttttttttttacaagatgattttttttttgtacaagtCTTTACAGTTTCCTCACAACACGCCAATGTCCATGTGTACGTGAGGAGTGAATAATTACAAAAATCCCCAAgtgtctttaaaaaataaaaaaatccatttacTTTTAGACcgagataaatagataaatacatCAACAAATCCTAAAAACGGGGGCTTGCCAGcctcacaaataaataaatagaatcaTAAATAACATTCAAAATATCTTTGGCCGAACTCGGGCCATGTGTCGATTCCCCCCCACGAACCCTCCATGAAGCTGGTCATCCTTTACAACCACTTACTAACTTACTTACTGTAGCTACGATCTTCCAGAGCATGGGTGCACTGGACTCTCTTACTTAGGGGGAGGGAATGGGGGGTCGAGAGTAAAAAGCAAAGctaaacaaggtaaaaaaaagaaaaaagaaatcataCTTATTATAACAAAACAATTCCATTGAGGCACTTTTTTAAGGATGTCAAAGAAAACGCTTGCCTTGTTTTTATCCTCCATCTTGTCCTtgatttctgtctctttctttaaGCATTTGaaagaaaagcagaataaatatgacaataaaaaaatggacgACCCATGGATGtaacaaaaagtttttttttttttatctctttctctctcttttctttcctcttGTTTCTTGTCACCATGTGATAACCTTCATAATCCTTGTGCACAATCTTCTGCACAAGGAATTGAGGCAAACAGCAAGTAGCGCACACTAAATCAggatttttaagattttaagtataacaaaaaccttttaattagccaaaaaacaaggaaaaatccgctaagaaattgaagtaaataaataaacatcttCTAAGttcacatttgtttagtttttttttttttttttttcaagcttgCAAGAGCAGAAAACATCATCAATGTTTGTTTTcggcggtggtggtggtgctagCTGTGGACGTGACATCAGTCTGGCTTTCGGAGCGGTCCCCGAATATCCCTGCGAGAGTTTTGAAGCGAGGTCCCCACTCGTTTAGGTAATCGTAATCCTCTTCTGTTTCACCGTTTAGGGATTCGATAGAGCTCAAGCTCTCGGCCACCGAACCCTCGCCTTCGTAAGCGTAGGTGGCCAGCGAGTCGTAGGGAGGGGCCGAGGTGTCTCCGTCGTGTTCCTGCAGCCTCTCGGTGATGAAGTCCTGGATGTCCGCACTGTCCTGCGAGGTGGCGGCGGGCCGAGGGACGGAACCGGCCTCTGGCTTCACGTCGCGCCTGAAGAGGTTTTCTTTGATGGCTTTGGGGTTCCGGAGAGTGCCCATGTCGAAGGCGTGCGTGTCCTCCTCCCCGCCGCCTTCGTCGTCGTAGTGGATAACGTTGTCTCGGATGTCCTCTTTAGACGTCATCAGCGTCTCCTTTTTCTTCTGCCTCCTCACGCCCACGTACAGCACCACGATCActgcagagacacacacacgaGGGACAGAAACATGAAGAatgaagcattaaaaaaagcaacacTCGAACACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72848 lncRNA downstream 7178 23434023 ~ 23434272 (-) True G54031
TU72846 lncRNA downstream 44403 23396813 ~ 23397047 (-) True G54029
TU72845 lncRNA downstream 58332 23382722 ~ 23383118 (-) True G54028
TU72844 lncRNA downstream 118451 23322689 ~ 23322999 (-) True G54027
TU72838 lncRNA downstream 164197 23276834 ~ 23277253 (-) True G54021
TU72858 lncRNA upstream 85069 23528135 ~ 23528974 (-) False G54041
TU72859 lncRNA upstream 85069 23528135 ~ 23528974 (-) True G54041
TU72860 lncRNA upstream 90605 23533671 ~ 23534022 (-) True G54042
TU72865 lncRNA upstream 93758 23536824 ~ 23537058 (-) True G54047
TU72872 lncRNA upstream 114434 23557500 ~ 23562932 (-) True G54053
XM_007250130.3 mRNA downstream 1376447 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 1387362 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 1387547 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 1503002 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 1519833 21919529 ~ 21921617 (-) True ddit4
XM_022670368.1 mRNA upstream 1051249 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 1343185 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 1343185 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 1343185 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 1343185 24786251 ~ 24878021 (-) False svil
TU72809 other downstream 349475 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 594113 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 2622041 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 2653832 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 2751028 20681811 ~ 20690422 (-) True G53562
TU73059 other upstream 898334 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 1344128 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 2123208 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 2124075 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 2124327 25567393 ~ 25567465 (-) True trnak-uuu_2

Expression Profile