RNA id: TU72859


Basic Information

Item Value
RNA id TU72859
length 677
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G54041
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23528135 ~ 23528974 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttagggttcaagcaccgaaggtgcgtagaaccctattgtttttgctaagatttttcttcttcttcttcttcttcttcttattattattattattattattctttttctcctgtaaaaacagttgtgcagcctaaaccgtaagtcatagagaaatgaaacttggtaggtagatgtaggatcagtgcatctcggtggacaacaaaaatggcaccgattggtcaagtggtggcgctataaacaaggaaattcatttttcacaattttctcaataactcaaaaaccataagacctacattcaaaattctttttttgatggattccttgggtcaataccaacaactttccaatttggaccatgcacttccgtctatatagattttgtgctaatttgcataatatgcaaaacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaacactcgtgagagcatgcgcttcaatattcattaagaaaaagttgaaatatgtaaacaatatggctgccatatgcaaattagtccttccggatatatgccccattcacttcaagaggtaaatttggagcactgtttctcagcaaccgtgcaacccaGCAagctgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72849 lncRNA downstream 85069 23441450 ~ 23443066 (-) True G54032
TU72848 lncRNA downstream 93863 23434023 ~ 23434272 (-) True G54031
TU72846 lncRNA downstream 131088 23396813 ~ 23397047 (-) True G54029
TU72845 lncRNA downstream 145017 23382722 ~ 23383118 (-) True G54028
TU72844 lncRNA downstream 205136 23322689 ~ 23322999 (-) True G54027
TU72860 lncRNA upstream 4697 23533671 ~ 23534022 (-) True G54042
TU72865 lncRNA upstream 7850 23536824 ~ 23537058 (-) True G54047
TU72872 lncRNA upstream 28526 23557500 ~ 23562932 (-) True G54053
TU72949 lncRNA upstream 625629 24154603 ~ 24158935 (-) True G54124
TU73035 lncRNA upstream 744017 24272991 ~ 24290777 (-) True G54188
XM_007250130.3 mRNA downstream 1463132 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 1474047 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 1474232 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 1589687 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 1606518 21919529 ~ 21921617 (-) True ddit4
XM_022670368.1 mRNA upstream 965341 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 1257277 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 1257277 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 1257277 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 1257277 24786251 ~ 24878021 (-) False svil
TU72809 other downstream 436160 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 680798 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 2708726 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 2740517 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 2837713 20681811 ~ 20690422 (-) True G53562
TU73059 other upstream 812426 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 1258220 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 2037300 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 2038167 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 2038419 25567393 ~ 25567465 (-) True trnak-uuu_2

Expression Profile