RNA id: TU72860


Basic Information

Item Value
RNA id TU72860
length 352
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G54042
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23533671 ~ 23534022 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggagttagccattagcttagcgcGGACTCCGGCTCTCTTACCGCGCTTTCGGCTCCTCGCGCAACGCTTGCGGAGAGACCTCTTCCGGCTAGCAGGCTCAGGAAATGCCGCGGATCTTAGCAGGCCTAGCGCGCGTAGCTCCGCTCGTAGACCgtctgtaagtacagatttttgttgattttgcaggtctagcagggtctgtcggtcgtaagttgttcccatagcgaacttttgcatgattgcgagttcagatcggattatttacacagaaaaacaaacaaaagcaccgtGTTTTGCTTCCGGAGTGGCCGCTGCGACTGCTCGCGCCGCCGACAGGAAGTGCACATGTTA

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72858 lncRNA downstream 4697 23528135 ~ 23528974 (-) False G54041
TU72859 lncRNA downstream 4697 23528135 ~ 23528974 (-) True G54041
TU72849 lncRNA downstream 90605 23441450 ~ 23443066 (-) True G54032
TU72848 lncRNA downstream 99399 23434023 ~ 23434272 (-) True G54031
TU72846 lncRNA downstream 136624 23396813 ~ 23397047 (-) True G54029
TU72865 lncRNA upstream 2802 23536824 ~ 23537058 (-) True G54047
TU72872 lncRNA upstream 23478 23557500 ~ 23562932 (-) True G54053
TU72949 lncRNA upstream 620581 24154603 ~ 24158935 (-) True G54124
TU73035 lncRNA upstream 738969 24272991 ~ 24290777 (-) True G54188
TU73054 lncRNA upstream 797586 24331608 ~ 24332070 (-) True G54202
XM_007250130.3 mRNA downstream 1468668 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 1479583 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 1479768 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 1595223 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 1612054 21919529 ~ 21921617 (-) True ddit4
XM_022670368.1 mRNA upstream 960293 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 1252229 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 1252229 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 1252229 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 1252229 24786251 ~ 24878021 (-) False svil
TU72809 other downstream 441696 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 686334 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 2714262 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 2746053 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 2843249 20681811 ~ 20690422 (-) True G53562
TU73059 other upstream 807378 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 1253172 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 2032252 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 2033119 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 2033371 25567393 ~ 25567465 (-) True trnak-uuu_2

Expression Profile