RNA id: TU72886


Basic Information

Item Value
RNA id TU72886
length 312
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G54063
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23632913 ~ 23633386 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCAGggtgcgggtgcagggaggacgaggaggcggacgcaaatgcaaacaaaacggGGGTTTATTAACAAAACAGGATATACAATACACAGGGATTTACTGAACACAGGACTAGGGGAAACTCTGGAAACcatggaacactgacagacgaaaaacgtacaaggatcgacaccggggaaatgaaacacagaccttacataacccccccttaacgcgcaactccCGGGGCGCGAAAAACGAAACCCCAGGAGCAGGTCAGGAGAGGgcggaaaacaaagaacaagacaagacagaactAGGACGGAGACCGGac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72869 lncRNA upstream 69595 23557754 ~ 23563318 (+) True G54050
TU72867 lncRNA upstream 70184 23557027 ~ 23562729 (+) True G54049
TU72864 lncRNA upstream 95789 23536733 ~ 23537124 (+) True G54046
TU72855 lncRNA upstream 182900 23449591 ~ 23450013 (+) True G54038
TU72854 lncRNA upstream 185838 23446790 ~ 23447075 (+) True G54037
TU72916 lncRNA downstream 248593 23881979 ~ 23882395 (+) True G54093
XR_002650113.1 lncRNA downstream 326063 23959449 ~ 24048897 (+) True LOC111192728
TU72945 lncRNA downstream 512302 24145688 ~ 24145986 (+) True G54120
TU72954 lncRNA downstream 639631 24273017 ~ 24290765 (+) False epc1
TU72960 lncRNA downstream 677526 24310912 ~ 24359605 (+) True G54130
XM_007250137.3 mRNA upstream 189846 23158042 ~ 23443067 (+) True LOC103025909
XM_022670364.1 mRNA upstream 902423 22495776 ~ 22730490 (+) False LOC103025391
XM_022670900.1 mRNA downstream 121351 23754737 ~ 23952929 (+) True LOC103028344
XM_007259679.2 mRNA downstream 581737 24215123 ~ 24226834 (+) True LOC103038196
XM_007259675.3 mRNA downstream 620801 24254187 ~ 24290762 (+) False epc1
XM_007259674.3 mRNA downstream 626936 24260322 ~ 24290762 (+) True epc1
XM_015608463.2 mRNA downstream 698236 24331622 ~ 24356664 (+) True kif5b
TU72536 other upstream 1711319 21919225 ~ 21921594 (+) True G53804
XR_454832.3 other upstream 2807239 20794025 ~ 20825674 (+) False fbxo11
TU72167 other upstream 3072079 20557884 ~ 20560834 (+) False cript
TU72063 other upstream 3205710 20419221 ~ 20427203 (+) False LOC103044634
TU73348 other downstream 1912606 25545992 ~ 25549470 (+) False srp19
trnaw-cca_1 other downstream 1931275 25564661 ~ 25564732 (+) True trnaw-cca_1
trnaw-cca_2 other downstream 1931856 25565242 ~ 25565313 (+) True trnaw-cca_2
trnaw-cca_3 other downstream 1933509 25566895 ~ 25566966 (+) True trnaw-cca_3
trnaw-cca_4 other downstream 1935760 25569146 ~ 25569217 (+) True trnaw-cca_4

Expression Profile