RNA id: TU73035



Basic Information


Item Value
RNA id TU73035
length 672
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G54188
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24272991 ~ 24290777 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CCACCACGCACTTCATTCGACTTAACCTGGGCTTTATTGTCAGATTTCTGTGGGAACTGTCACATATCCCCCCTCACACTTTAATaatatttcatcttttttttttttttttttagatttccaatatttttcaTTCTTTGTCTGCCACCAGGTTGGACTAGAGCTCTGGAGGGTGTTCAGTTCAGCCAGTGGACTGGGCATCGGAGACCTGTGCTCCGGACAAGCCAGGACTGCAGTACTGCAGCCTTGCCCGAGAGCCATCCTCTTCATGGAAGAGACGAAGCAGTATATTCCCAAAGGAAGGCACACCTTTTAACTTGTGGTTTTAGGCCTTAAAATAGTCTGGAGTCTGTTGGTGCGGTTAGAGACTGAGGTTGAGGAGATCGGAGCTGGGCAGCgactcctgctctctctctgtccagcGTGTCTTGGAGCTGAAAAAATATGACACGGTCACAGCAATAATGGACTGTCATTCGCTCATTAGTGAACGCTACACTGACGAGCAACCAAAAACGAACTCTTCCATTACGCGAAGCACAAAGTCGCTTCACCAcaagaactgaaaacaaaaactaacaaaacaggatacaaaaataattgtctgttgttgtacaaataaaataataattaaaaaaaaaaaactaagaacactaaatttaaaggaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72949 lncRNA downstream 114056 24154603 ~ 24158935 (-) True G54124
TU72872 lncRNA downstream 710059 23557500 ~ 23562932 (-) True G54053
TU72865 lncRNA downstream 735933 23536824 ~ 23537058 (-) True G54047
TU72860 lncRNA downstream 738969 23533671 ~ 23534022 (-) True G54042
TU72858 lncRNA downstream 744017 23528135 ~ 23528974 (-) False G54041
TU73054 lncRNA upstream 40831 24331608 ~ 24332070 (-) True G54202
TU73056 lncRNA upstream 49234 24340011 ~ 24340825 (-) True G54204
TU73057 lncRNA upstream 54349 24345126 ~ 24351936 (-) False G54205
TU73080 lncRNA upstream 169002 24459779 ~ 24463132 (-) True G54224
TU73083 lncRNA upstream 201924 24492701 ~ 24492970 (-) True G54227
XM_007250130.3 mRNA downstream 2207988 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 2218903 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 2219088 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 2334543 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 2351374 21919529 ~ 21921617 (-) True ddit4
XM_022670368.1 mRNA upstream 203538 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 495474 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 495474 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 495474 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 495474 24786251 ~ 24878021 (-) False svil
TU72809 other downstream 1181016 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 1425654 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 3453582 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 3485373 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 3582569 20681811 ~ 20690422 (-) True G53562
TU73059 other upstream 50623 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 496417 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 1275497 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 1276364 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 1276616 25567393 ~ 25567465 (-) True trnak-uuu_2

Expression Profile