RNA id: TU73056


Basic Information

Item Value
RNA id TU73056
length 215
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G54204
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24340011 ~ 24340825 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCCTGTACAATTCGTGGAATGATTCCCATTCCGTCTGGGTCATGCAAATTACCCTCCATAGTGTGTGTTTTGCCAGAAGAGGTTTGCCCATAGGCAAATATTGTGCCGTTATAACCCTCGAGCACATCTTTAACAATCTTCTGAGCGCAGGCATTATACACCTGCTCCTGTGAAGTGTTAGACTGGAAAACACGGTCGAACATGTAGGGCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73054 lncRNA downstream 7941 24331608 ~ 24332070 (-) True G54202
TU73035 lncRNA downstream 49234 24272991 ~ 24290777 (-) True G54188
TU72949 lncRNA downstream 181076 24154603 ~ 24158935 (-) True G54124
TU72872 lncRNA downstream 777079 23557500 ~ 23562932 (-) True G54053
TU72865 lncRNA downstream 802953 23536824 ~ 23537058 (-) True G54047
TU73057 lncRNA upstream 4301 24345126 ~ 24351936 (-) False G54205
TU73080 lncRNA upstream 118954 24459779 ~ 24463132 (-) True G54224
TU73083 lncRNA upstream 151876 24492701 ~ 24492970 (-) True G54227
XR_002650049.1 lncRNA upstream 263200 24604025 ~ 24604660 (-) True LOC111192639
XR_002650050.1 lncRNA upstream 275220 24616045 ~ 24637375 (-) True LOC111192640
XM_007250130.3 mRNA downstream 2275008 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 2285923 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 2286108 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 2401563 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 2418394 21919529 ~ 21921617 (-) True ddit4
XM_022670368.1 mRNA upstream 153490 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 445426 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 445426 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 445426 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 445426 24786251 ~ 24878021 (-) False svil
TU72809 other downstream 1248036 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 1492674 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 3520602 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 3552393 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 3649589 20681811 ~ 20690422 (-) True G53562
TU73059 other upstream 575 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 446369 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 1225449 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 1226316 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 1226568 25567393 ~ 25567465 (-) True trnak-uuu_2

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000035 False 8469 mRNA 0.53 58 NC_007112.7 260039 ~ 296057 (+)