RNA id: TU73059


Basic Information

Item Value
RNA id TU73059
length 1933
RNA type TUCP
GC content 0.49
exon number 16
gene id G54205
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24341400 ~ 24351936 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGAGTTTCCGAAGGTTATGGAGAGTCTGCAGCTCCTTAGCCACTGTCTCCTCCAGGCCTTTCAGGTCTTGTCTGGCCTGTTCCCTTCTGTCCTGCATAACCGTGAGGTCGTGCAGTTTGCGGCTCTTATCCTGGTCTGTGGCTTTGAGCTTCTCATGTTCTACCCTAAGGCGCTCCTGTTCCAGCAAGATCTTCTGATTCATATCCTGTAGTTCAGTAATGAGCTTCTCCTTGGTCTCCAGCTCATCTCTCAGGCTGCTGAGCTGTTTCTGATGAGCCTCCCTATGGTTCTGGATCTGCTGCTCCACTGCAGCCTTGACCTCATTGGCTGTCTGAATCTCATTTTCCTTCTCCATAGCATGAACCTTTTCCTGAGCGCTGATTTTGACCAGTTCTTCATTAAGCGAGTCCACATTTTCCTCCAGCTGTCTCTTCTTATGTTCTACATTCTGAAGGTACTCTGTTAGAGACTTAATCTTGGCCTCATGCTGAGAGATGCGTAGTTGGCAGGCAGCCAGCTCCTTCTCGTTCTCGTCCATCTTTTTGTTACTGTCGGCCTGAGCCGCCTCCAGCTGCTTGCTGCGCTTCACCAGGGTCTTCACCTCTGACTTCATCTTACTGATATAGAGCCTGGCCACAGTGAACTCCTCATCAATCAGACCACTGCCTTCATGCTTGATGTCATTGCTACCCACAGCAATACCGATCTCAGCCAGGTCCTTCAGCAGTGAGGACATCATCTCAGTCACCCTCTTCTTCTGGTGATTGCTCATCTCCTTCAGCTTTTGCAGTTCAGAATCTAAAGAAGCTAGAACACCCGATTTCTGGCTGAGTTCTTCACTGAGAGTCTCGAAATCCTTTGTTTTATCCTCCACTTCCTGACTCTTCTGGTCATAGTTGACGGCCAGCTCCTCCAGGGCCTGCAGCACCTCCTTCACCTCCTCTTTAGACGCATCGTTCTCCATCTGCAGACGCGTCAGCTCCGCCTGCAGGTTATCATGGTCCCTCCGTGATGAGGCCAGCAGCTCCTCCTGGTCCAACATCTGCTGCTTCAGTTTCTCAGCCAGCTGAGACTGCTGATTTATCTCATCATCCTTGTCGTCCAGTTGTTTGTAGAGTTTGGCCAGCTCAGCCTCGCACTTGTCTCTCTCAGAGTCAGTCAGACGCACTCCAGGGATGTTGGGGGTGGAGGCTATCTTATCATTATTCACGGTGTTGTCCAAAGCCAACACCTCAGCATTGACCTTCTCCTTATCATACTGCTCTTCAATGGGCACATTCTCACcattccTCCAGCGGTTGAGTTCGTTCTCCAGCCAGGTGATGGTGTTCCTCAGCGTTttgttcttctctttttccttctcatATTTCTTCTTCCACTGTTCTGCTGTCAGCTCCACATTCACGCACACTGTATTCTTAATGGTCTTTGCCCTTTGTCCAAACATGAGTGTAGTTTTGGTTTCAGCCTCGTTAAAAGAGGAAGGAGAGCAACAAATGACAATGGTGGTTCTACAGTTTCCACCCAGAGAGTCCTGAAGAATCCTGGTCATCTTACTGTCTCTGTATGGAACATACGTAGTTCCTTCAGCCAGTGCAGAGATGACGTTTCCCAGCGCGGAGAGGgacttattaatgtttttggcTTCATCTAACACAGCTCCTTCAGCTCCCGTCTTACTGACCTTTTCACTACCAGCCAAGTCAACCAGAAACAGTTTCCCACTTAGTTtctgctctgtttgtgtgttctcCTGCTTCACGTTAATCAAGAAGATACTGTGACTCCTGGAGCTGTGCTCATTCATGTTTGTAACCGCCACATGTCTGTTAGATTTGCCCTCATCGATAGTGTCCATCACCTCTTCTGGGCTACAAACAAAGCGCTCAGTGCAAccctgcagaaagagagagggagaaagagagagggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73056 lncRNA downstream 575 24340011 ~ 24340825 (-) True G54204
TU73054 lncRNA downstream 9330 24331608 ~ 24332070 (-) True G54202
TU73035 lncRNA downstream 50623 24272991 ~ 24290777 (-) True G54188
TU72949 lncRNA downstream 182465 24154603 ~ 24158935 (-) True G54124
TU72872 lncRNA downstream 778468 23557500 ~ 23562932 (-) True G54053
TU73080 lncRNA upstream 107843 24459779 ~ 24463132 (-) True G54224
TU73083 lncRNA upstream 140765 24492701 ~ 24492970 (-) True G54227
XR_002650049.1 lncRNA upstream 252089 24604025 ~ 24604660 (-) True LOC111192639
XR_002650050.1 lncRNA upstream 264109 24616045 ~ 24637375 (-) True LOC111192640
TU73097 lncRNA upstream 365545 24717481 ~ 24718187 (-) True G54237
XM_007250130.3 mRNA downstream 2276397 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 2287312 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 2287497 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 2402952 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 2419783 21919529 ~ 21921617 (-) True ddit4
XM_022670368.1 mRNA upstream 142379 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 434315 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 434315 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 434315 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 434315 24786251 ~ 24878021 (-) False svil
TU72809 other downstream 1249425 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 1494063 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 3521991 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 3553782 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 3650978 20681811 ~ 20690422 (-) True G53562
XR_002650051.1 other upstream 435258 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 1214338 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 1215205 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 1215457 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 1215709 25567645 ~ 25567717 (-) True trnak-uuu_3

Expression Profile