RNA id: TU73080


Basic Information

Item Value
RNA id TU73080
length 2165
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G54224
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24459779 ~ 24463132 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGTCCATGTCAGAAACAGTAGTTAGTCTCAGAATTACATTCAAAATGTGCTGTTCACAATGCATTGCAATGCCAACCCTTCTTAACTTCTGAAGCaattaatatctaatatttattattcttaacGTTTATAATATTAGAGCAATCTCTTCTCACTTTATTGtttatctgctttttttttaacaattggTTCATTAAGTCTTTTGAAGTTTGTAAGGGAATCTGTACACATGCTTTCAAAATCTGGTATCAAAATGGATTTTTACTTCGTGTACAGCCTGAACACCCCCATGCCACTCATATTTCCAGTACCCTCAGTTGATATATTCATGTGGAGACTAGGGTAAGAAGGATAGATAGAAGAAcagggaagaagaagaagaggaaagaaGGGAAGAAAGGGGAGTATCGCTATCACTATTGATTTGAAACAGTAGCGGCAGGACTGGATGCAAACTTGAACGTCTCTGTTTTCAGGTTCCAGTAATGCTAGAGAGGGTaagagatggatagatggagtaAGCAGGGAAAAGGGAATAAAGgatataaaaggaaaaaagtacAGCAACAATGTGGGCGGGgcaaagacagacagaggaaGGAGTTCATCTTTCAACATATTCCTAAATAATTCATGGCCACTGGTCATGGTCACATTTGGTATTTTTTTCTGGTCCTACTGGGCAGTAGGCGTAGGTAACATTGAAACAGCACATTGGTATAAACTGGTACAACCACTGGAAGACACGCAACGCAGTGACGTTGCCAACTGTTCCACAATACATAAACGCTTAATTTCATCCTCAAATAATCAACACAGACGTGACCACAAGCCTGATTGCACACAAGCCATTAATACGGTCTCAGTCCAGTTACAGTGAAGAGTTCCTCAAAAGCTCAGAGCGAGCCGTTCTGAGATCCTATTGGGTGTGAGATGTTGCCAAAAGGAGATGAAAAATCCAGTAATCCAGTAATATCCACTCTTTGAGAGAAATGGACATTTCTTTCCAGTTCTTTCAAAGAATGGTAGTTAGCCTGCAGTCAAAAGGGCAGATGCTAGAAgcaaaaaagttgaaaaagcACATCAGAGTAAGTCACCCCAATCCTCTCAATTCCTGAAAGAGTCCAGTTCTAATACTGACAGTAAGCCATTAGTCATACCTCTTCAGATCAGCCTCGTAAATGACTGCTTTTCCACAGAACAGTAGTCACTGAGAAATAATACTGCCGTCCAGAACAGTCCATTTCCATTGTAAttcaacagcaaaaaaaataataaaatgtccaAAACAAAAACCAAGTGCAGATTAGTGGGATTCTGTGCTGCAATGAATTGCCAGTCCAGTttcagaagctttttttttcagtattcttCAGTATTCACCATACATATACACTTCAAAGGTAAACTTCATATCCCAGAATCCTTAGCCCATATAGCAGTCTCCTTCAAGCCAGCCATACTGGTCCAGAAAGTAGCATATTGTCCAAAATGTCCAATGAGTGAGTTTTCCAAGCCTCAGCAAGAGCACAAATGGAGAATTTTAAACTGTTCACAATACTATCCAGCTTATTCTCAGCCAAGAGCAGAAGCAGCCCCTTCACAGGAAtggtaaccaaaaaaaaaaaatctgtacatCATCAAAAGCCCAAAAAATCATGAAGTGCATAAAGTACCTTTCTATAAACTTGAAATATTTTCAGCCACCATCACAAGCGTCCGTAACTCAGTCACTCGTCTTCTCTTAGTATTTGTTTCTCTACTAAGCTTGGTCCACAGCGAATGAAGCCTGCCTGAAGCCTGCTTTAACATGGTGGATTCTGCGGCGGTCGTGTTTTGGCATGGTGTTCTCTGGACCTTTTTATTAGCAGaaaggaaaagaaaggaaatcCACTCTTCTCCTTTCGATTTTCGGAATTCAcatcgccttgccatgagcatgctggctagTATTTAAcctctcacaagataacaccacacAACTGGCACAGTTACAGTGGACTGAGGCTCATTTACATGCAAATGAAATCAAAGACAAACGTCAGGGTGTTTGATACGGTGATGACAATCTGAGCTCAGTACCAGGATGGACCTTCACTACCTACCCATGTTTTACAGCGCAAAAGCTCTATGGAGAGGATGTGTACACTGACTGTAAATGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73057 lncRNA downstream 107843 24345126 ~ 24351936 (-) False G54205
TU73056 lncRNA downstream 118954 24340011 ~ 24340825 (-) True G54204
TU73054 lncRNA downstream 127709 24331608 ~ 24332070 (-) True G54202
TU73035 lncRNA downstream 169002 24272991 ~ 24290777 (-) True G54188
TU72949 lncRNA downstream 300844 24154603 ~ 24158935 (-) True G54124
TU73083 lncRNA upstream 29569 24492701 ~ 24492970 (-) True G54227
XR_002650049.1 lncRNA upstream 140893 24604025 ~ 24604660 (-) True LOC111192639
XR_002650050.1 lncRNA upstream 152913 24616045 ~ 24637375 (-) True LOC111192640
TU73097 lncRNA upstream 254349 24717481 ~ 24718187 (-) True G54237
TU73098 lncRNA upstream 262665 24725797 ~ 24726344 (-) True G54238
XM_007250130.3 mRNA downstream 2394776 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 2405691 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 2405876 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 2521331 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 2538162 21919529 ~ 21921617 (-) True ddit4
XM_022670368.1 mRNA upstream 31183 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 323119 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 323119 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 323119 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 323119 24786251 ~ 24878021 (-) False svil
TU73059 other downstream 107843 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 1367804 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 1612442 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 3640370 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 3672161 20783738 ~ 20787618 (-) True G53598
XR_002650051.1 other upstream 324062 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 1103142 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 1104009 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 1104261 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 1104513 25567645 ~ 25567717 (-) True trnak-uuu_3

Expression Profile