RNA id: TU73098


Basic Information

Item Value
RNA id TU73098
length 548
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G54238
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24725797 ~ 24726344 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttacaggggttggacaatgaaactgaaacacctgtcattttagtgtgggaggtttcatggctaaattggagcagcctggtgttcaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctctaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggcgcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgtttgggtgctaacccggttgtatccaaaaataaattaaaaccacggctgatcaaatcatggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaggacaataaattattgtggtctaaaaccaggtgtttcagtttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73097 lncRNA downstream 7610 24717481 ~ 24718187 (-) True G54237
XR_002650050.1 lncRNA downstream 88422 24616045 ~ 24637375 (-) True LOC111192640
XR_002650049.1 lncRNA downstream 121137 24604025 ~ 24604660 (-) True LOC111192639
TU73083 lncRNA downstream 232827 24492701 ~ 24492970 (-) True G54227
TU73080 lncRNA downstream 262665 24459779 ~ 24463132 (-) True G54224
TU73099 lncRNA upstream 13492 24739836 ~ 24740055 (-) True G54239
TU73174 lncRNA upstream 84476 24810820 ~ 24812627 (-) True G54276
TU73225 lncRNA upstream 224303 24950647 ~ 24953838 (-) False jcad
XR_002650052.1 lncRNA upstream 372832 25099176 ~ 25291974 (-) True LOC111192641
TU73250 lncRNA upstream 498676 25225020 ~ 25226203 (-) True G54338
XM_022670368.1 mRNA downstream 118492 24494315 ~ 24607305 (-) True zeb1
XM_007250130.3 mRNA downstream 2660794 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 2671709 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 2671894 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 2787349 21933269 ~ 21938448 (-) True anapc16
XM_022670382.1 mRNA upstream 59907 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 59907 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 59907 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 59907 24786251 ~ 24878021 (-) False svil
XM_022670380.1 mRNA upstream 59907 24786251 ~ 24878021 (-) False svil
TU73059 other downstream 373861 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 1633822 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 1878460 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 3906388 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 3938179 20783738 ~ 20787618 (-) True G53598
XR_002650051.1 other upstream 60850 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 839930 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 840797 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 841049 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 841301 25567645 ~ 25567717 (-) True trnak-uuu_3

Expression Profile