RNA id: TU73181


Basic Information

Item Value
RNA id TU73181
length 3175
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G54281
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24950612 ~ 24953831 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTGTCCATGCAAAGAGTTTATTAATGAATACTTTGCTGTAATGTACAAAGAAAGCACTTTCCCAACATTGTGTTTAAAACTGATTGCTTGAAATACGCTCCTATATAATAAACACTTCCCttctttaaaatactttaaaaataatattctgaATTTAAATATCTGTCAAAGCTTTCTTTTCGGAAGATACAAATATGCATTAtgaaatataatgatatttttgtAGTATATAGTACCAAATGCAATTATATGCAAAACCTCAGTCCCCAGTTTCACCCATGATAACTGTAACTCATGCGGAAAGGGAACACACATTAATACCAACTTGTACAAAAACAGACGTACACAGTTTCTGTATGAAAATAGAAAAGAATATTAACTGAAACGTACTGTTGGCAACACTGTAGCTGTTAATGTTGCACAGCCTCTTACAAAGGCTTACAGAGAAACTATACACTGATGACAATGACCATTTAACAGTAAATAACAGGATTATGATTATTTCTGTGTGATTTGCTTTtaagaagtgttttttataataatactcTTTATGGGTCATGGCCTAAGTCACCTTATGacatattaaatcatatatgCAACATCATATCATATTGATATTCTCATATTACTGGAATTCACATACATTTGCCCACATTGCACAGCATTTACAAGCAGCTACACTGATACTGATAGTGCTATAATACGTATTAATGGCTGATGTTGTTTGGCAGAAATGTCATGAATATACCCTACACTCTAAAGGTGCTTTAAATTAGCAATGCAGTAGAAGAACCACTTCTGGTTCCATACTGAACAATGTTTGTAAAAGGTAGAGCTGGACGATACAGCCGAGACTTagatcacaatatattgatataattttgatatcaagcctcaaaccaaacaaaataaatgggCCAATTTACGTAAAAAGCCCCGCAATGAACGTCAGTCAGTTatctaacaaataataaaaaatatcctatcatgatatattgaattattgtccagcccttGTATTAGTCTAGGTTCACACATCACGTAAAAGTGGTCCAAATTCAAAcgttattaatttttttttacagagttttcTGTGTGGCAGTTTTAACGCCAAAAGCCACTTTCAATCTGATATTGTCAATTCTGATTTGGGCCTCTTTTATTTGTGGTACTAAAATCTGATAAGTCTGATATGCAGCAATGGAAATAGCAATAGTCTGAACAAGATTTGAATTTATGTGCCTTTCATTAAAGAAATGGACGtgaggaaaattaaaaaatgaaagacaGCATTGAGTAAGGGATTCAGTGTCAGGATGACGAGGtaacatacttttatttttacttttaatttaatttaacattaattttaatttaaagaaatgtgtaaaacagtAGCATAATACAGCCACAAGAAGGCGCTGCTGAAAATtcaaagaaaaatctaaaactaTAAATGTTTAGGACACAGCAATGCCACTAAAAATAGGTGTAAGGAGAAGGACAAAATAGACAACACCAGTGATGAATGTTTTTTAGTGCTGGATTATTAAAGTAACacatttcaaatatttaaacGTAATTATAGTTTGAAGAAATTTCTAAAGTGCACAATGAGCCCACAAGATCTTTTTACAGTGAGCTTGATTTAATTCTCTGTATTAATTCTAGTCGTCAGACACTGATCTCCCTGATGTGATGCTGATGTGATGCTGGCAAAGATGAAACCAAATCTTCACGTGAAGCACTGCTCCTTCAGTTTAGAAGCAAAAACAAATGTCGGATATAGTGGAAGTAGATTGGGAAAATTGGATTTGGGCCagttttacctgctgtgtgaacatagacAACTTTATTACAAATACAGTTCTTTAGAAAACCAAAAGTGGTTACTCAATGACAACACTCATATTCACCATTTGAACCATTTAAAGACAAAGTGGTACAAACGAGAAGCTCTAACTTGATGTCATCATGATGACCCGAACAAGATAAAGACAACACAACATATAAGATATTTCGTCAATTCTGCATCAAAAGGCACACCGACGCCACCTGAAAACCCCACTCACTGCACAGACTCCGCAGGAAACACCACATACTCACACACGACATACGCAAAGTGATTGCAATCAAGCTAATTAAATTACACGGTTAATTCTCAAGTACTgcttaaaatacaatattttcttttttacagtctgaggATTgcttggtaaaaaataaatacacattcgTTTTGCATGTGTGGCACGATGAGCGATGTGTTTATGTGATTCTGCTGGCTACTGTCGTTAATCATAAGCCCTGTATTGCATATAAGATATTGATGCATATGAGTCAGAGCAGAGAAAAACATCTTAAATCACTGGATATGAAAAATGACGGATACGGGTCCAGAGTTATGTACAGAATAACACTGGGGACTGACGGGCTTAATGAAACCTTGGTATTACCAGGTACATCAGTGTCATACAGGACAGGAGTCACTGAAGCTTAGAAATTGCAATCAGCCACAGTGTTAACACAACCTCCATGTTTTTACACTCATTATACTTATATTATTGTGCATCAGCTCCACTGACCCTTTAGGAgcagtttgtattttttttttatttaatgatagattattatatttaattatagcttcacttaataattccagatcagtaacaggaatcaacccacaTTTAAAACCCATTTTTGAAAATAGaggtaaaaactagacaaaactaAAGCTTTGGAGGACATGCACTGTTTGATttgtactgattttaaaatgaagtttaggaAAGAGACATTTTTATGATTCTATTCATTAgattttgacagttgcagattgactattttttatttattctatttttctatactttctatGACAATTACAAGTATGATTTTCAGTAACGTTCCTCATTAAACATAAAATCTTTTAATGTAATGCTGGAATAGAAATCCTTAAGATTTAGTgttgtaatgtcaggcagaaaattgacaaaaatcctggcctgtttaAGGGGTTAACAAGTGTACAGAATACCAGACTAATTTCCTATAGTGGAAACATGAATAGTAAGTGTATAATCAAGCAGGTGGTCTTAATATTATGGCTGATTGATGTATTTTAAATGAGAAAGGTTGGAAATGGTGTAGGTTTATTTAAATACTAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73178 lncRNA upstream 6836 24943451 ~ 24943776 (+) True G54280
TU73116 lncRNA upstream 140182 24808973 ~ 24810430 (+) True G54253
TU73110 lncRNA upstream 152179 24796334 ~ 24798433 (+) True G54248
TU73104 lncRNA upstream 168688 24781669 ~ 24781924 (+) True G54244
TU73019 lncRNA upstream 212012 24738344 ~ 24738600 (+) True G54183
TU73214 lncRNA downstream 144481 25098267 ~ 25098524 (+) True G54303
TU73211 lncRNA downstream 153326 25107112 ~ 25108818 (+) False map3k8
TU73217 lncRNA downstream 182649 25136435 ~ 25136994 (+) True G54306
TU73222 lncRNA downstream 271331 25225117 ~ 25226098 (+) True G54310
XR_002650053.1 lncRNA downstream 404216 25358002 ~ 25378241 (+) False LOC111192642
XM_015608465.2 mRNA upstream 235379 24641088 ~ 24715233 (+) False znf438
XM_022670392.1 mRNA downstream 138776 25092562 ~ 25108871 (+) True map3k8
XM_022670386.1 mRNA downstream 343270 25297056 ~ 25304115 (+) True sncaip
XM_007260774.3 mRNA downstream 369331 25323117 ~ 25346099 (+) True snx2
XM_007260775.3 mRNA downstream 369331 25323117 ~ 25346099 (+) False snx2
XM_007260776.3 mRNA downstream 369418 25323204 ~ 25346099 (+) False snx2
TU72536 other upstream 3029018 21919225 ~ 21921594 (+) True G53804
XR_454832.3 other upstream 4124938 20794025 ~ 20825674 (+) False fbxo11
TU72167 other upstream 4389778 20557884 ~ 20560834 (+) False cript
TU72063 other upstream 4523409 20419221 ~ 20427203 (+) False LOC103044634
TU73348 other downstream 592206 25545992 ~ 25549470 (+) False srp19
trnaw-cca_1 other downstream 610875 25564661 ~ 25564732 (+) True trnaw-cca_1
trnaw-cca_2 other downstream 611456 25565242 ~ 25565313 (+) True trnaw-cca_2
trnaw-cca_3 other downstream 613109 25566895 ~ 25566966 (+) True trnaw-cca_3
trnaw-cca_4 other downstream 615360 25569146 ~ 25569217 (+) True trnaw-cca_4

Expression Profile