RNA id: TU73214


Basic Information

Item Value
RNA id TU73214
length 225
lncRNA type intronic
GC content 0.42
exon number 2
gene id G54303
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25098267 ~ 25098524 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAACCCCTAGCCTACTGCAACTCAAACCTAACCCCAACTCTAAACCTAATGCAACTCAACTCTGACCCCATCCCTAAACGTAAGCCATAAACCTACTGCAACTCAACCCTCACCCAAACCCTAAACCTTCTGCAACTCAAACCCATTCCTAATCATAACCCTTGTCCTAATCTTTATCCAAACCAGAACTAAATTTAGTTCAAGTTATTCAGCAGCTTGTCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73184 lncRNA upstream 144436 24950670 ~ 24953831 (+) False G54281
TU73181 lncRNA upstream 144481 24950612 ~ 24953786 (+) True G54281
TU73180 lncRNA upstream 144481 24950670 ~ 24953786 (+) False G54281
TU73178 lncRNA upstream 154491 24943451 ~ 24943776 (+) True G54280
TU73116 lncRNA upstream 287837 24808973 ~ 24810430 (+) True G54253
TU73211 lncRNA downstream 8588 25107112 ~ 25108818 (+) False map3k8
TU73217 lncRNA downstream 37911 25136435 ~ 25136994 (+) True G54306
TU73222 lncRNA downstream 126593 25225117 ~ 25226098 (+) True G54310
XR_002650053.1 lncRNA downstream 259478 25358002 ~ 25378241 (+) False LOC111192642
XR_002650054.1 lncRNA downstream 259930 25358454 ~ 25378241 (+) True LOC111192642
XM_015608465.2 mRNA upstream 383034 24641088 ~ 24715233 (+) False znf438
XM_022670386.1 mRNA downstream 198532 25297056 ~ 25304115 (+) True sncaip
XM_007260774.3 mRNA downstream 224593 25323117 ~ 25346099 (+) True snx2
XM_007260775.3 mRNA downstream 224593 25323117 ~ 25346099 (+) False snx2
XM_007260776.3 mRNA downstream 224680 25323204 ~ 25346099 (+) False snx2
XM_007260803.3 mRNA downstream 300459 25398983 ~ 25441210 (+) True prdm6
TU72536 other upstream 3176673 21919225 ~ 21921594 (+) True G53804
XR_454832.3 other upstream 4272593 20794025 ~ 20825674 (+) False fbxo11
TU72167 other upstream 4537433 20557884 ~ 20560834 (+) False cript
TU72063 other upstream 4671064 20419221 ~ 20427203 (+) False LOC103044634
TU73348 other downstream 447468 25545992 ~ 25549470 (+) False srp19
trnaw-cca_1 other downstream 466137 25564661 ~ 25564732 (+) True trnaw-cca_1
trnaw-cca_2 other downstream 466718 25565242 ~ 25565313 (+) True trnaw-cca_2
trnaw-cca_3 other downstream 468371 25566895 ~ 25566966 (+) True trnaw-cca_3
trnaw-cca_4 other downstream 470622 25569146 ~ 25569217 (+) True trnaw-cca_4

Expression Profile