RNA id: XM_022670385.1


Basic Information

Item Value
RNA id XM_022670385.1
length 8946
RNA type mRNA
GC content 0.43
exon number 4
gene id jcad
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24950612 ~ 24998120 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAACCATTCCTGTCCTGCCCTTCACACAGAGCACACAGAGCACAGCACATTTGGAGGCTAGAGGAAGCAGCTCATTCCCCTCCGTCTCCTCCAGGCAGCCTCAGCCTCAGGACTACCAGCAGCCCTCAGAGCAGCAGCGGTAACTGcaggaggagcagcagcaggagcagctcAGTGATGGCCCCTCTCGTGCAGCTGTTCCTGGGCTCGCCTCAGCTGGGATCCGTATAGAACTCTGGCGATATTCCACGCTCGCACACACACTTAGGACACCACGACACACTCCCTCCCGCTCAGCCATGTACAGCGTGGAGGACCTTCTCATCTCTCATGGATACAAAgtcagcagcagtagcagcagcagcaacaacaacaacgtCGTCGTCCCCCCGTCACACTCGCCCTCGTCCCAACACTCCCCCTATGATCAACGGCCGGCGTCACGCAGCAATAGCCGGTGTGAAATCGGCGAGAAGCGGACCGGACACGGTGGCACGGTGAATGGATACAAGCCGGACTGCGTTTATGTTGGTGGTGGCGGCGGCGGTGGAGGAGGTGGTGTCAGGAGGACGTCGTCTAGAGGTGGCCCCGGTGACACAGAGAGCAGGGACAGGAAGCAGAGGACAGCGGAAGAGGACAATGGTAATCTAGGAGATGGACAGTCGCTAGGGGACAGCTTGACCACAGACAGCGGGTTACCTGAGAGCAACAGAGGAGGCCACCCTCAGCCCAGGCCTGAGCGAGATGTGTCCTACTGGCGGAGACGAGGTCAGGACTTTAATGCACTCCTCGACTACGCTGACTTTAGAGACCTGCATGGAAAGGAATCGGGACTTTCAGTTAAAGCAGAGGGCATGCAGCGAAGGCCAGAGTCAGCCTTAAGCACCGAGGAGCACCGCCGCGAGAGGCAGCGCAGAGCGGACAGTGCACGTGCGAGGGAGCGTGAACTGGCTCTGTACCAGTGGAGAATAGCAGCAGAGAGGAAGTATCAGAGCCTGGGAACGGAGGAGTGGCGTCCAGCTGTGGGGCTGAGTCGCCAGTCGTCTCAGACTGAAGGTGAGAGATGGACGCAGGAGCAGCAGCGACGGCCTCGAACAGCAGAGGGTGCTGTTCCACCAAGGACCAAAGCCAAATCCCAGTCATTGCCCCGAATGGCTATACCCTCAGACAGCAGCGTCCAGTACTTAAGCACATCATCCCCTGCTCAAGATCCTTACGGGAGCTTCAGAATAAATGGGCATCAATTACGAGAGTCTCATGGACGTAATCTCAGTGAAGGGGAAGGTAGAGAACGGTGGACTGGCAATGGGCGGTCTGGTGTTCAGTCGGCACCCCCTTCAAAACCTCATTTCAGCCGGCCACTAAGACCACCATCGTACGAGGTTCACCAGCAGATGCGTGGAAGTTCGGAAATGCTTACTGGAGAATTTATGCCCCATGCCAGGGACAGGACTCCATTGCCTTTCAGCAGGCAAGAGTACTTTGTACAGGAACCTGGAGAGTCTGGCATGGAACCTCCAGGTTACATCCCTCCGCCATCTTACAGGAGACAGCCTCCAATGAGAGAAGGGCACAGGACTTATGCAAATTCCATGGGAAACTACCAGTACAGAGGTGACCTATACATGCAGGGACCAGCCCTGGCAAAAGTTCAGGAGTGGTTCATGAGACAAACCGGCATGGCTTGGCCAGATCATCACAGGGATGGGAGAAGGAGTATGCCCTGCAGAAGACAGGCCTACCCAGCTTACAGTGAGGAGCGGATGGGCAGCGTTCAGTACATACCTTTTGATGACCCTCGTGTCAGGCATATCTCAGGAGGGGGAATTGATGGGAATTCCTTGACGGATGCTGACAAAATCAGGAATATCAGAAAAGAGATTCCCATCATCTCATTATCTGAGAAAGCTCCTGATGACAGTGCCTTTATGTTCACGGAGAAAACCTACAGCAGCACAGAACCGACTAAAAGCAATATCAGCGATTGTGTTAATGAGGCAGCCATGCTTAAGGAGGTCTCAAAGGagacaaacaacacaaaatcaGCACCTGATGAAAATTCCAACAGGTATCCGTCTGACCGGGGCTTTTCCGATACCTTCCAAGCGCCGCTGTCACAGCAAAGCTGCGAGACTGTCACACAAGTGAAGAAATTTGAGGCACAAACTGCAGCTGAGaataagaagaacaagaagaaacagaaagagaccATGTTTTGCCTAGTGTCAGTTCCAATAAACATGATGGCAAGCAAGGAACCTGCTGACCCAAACAACAATGAAAAGGTGCAAAGCCCAATGATGGGACCCACAGAAAATCGGGTGACGACTCTTACATCTTATAGCCAAGACACCTCCACAGTTCCCATCAGCAGTGAACCTCAAATAGAGTCCAGCAGCTCGTTAGCTGTCAGAAACTCTAAACGAGCTCCTCTTAAGAAAGAGATTGTAGATATTTGGTCGCTTCAAGCAAGTAGTGACAAAGAGTTATGCTATGCAGGATCGTGGCCAGGAGATCAATACAGGAACCAAGAAACTCAAACAGGCTCTCCTGAGGTTTCCAGAGGGCTTCATACTCTAAGCCCTCAAGCCCATACTCACACCACATATGACCCTCCATCCTCTGACACCACTACGGACAGTGGAGTGGGCACAGAGTGCAGTGCCAGTTTTGGATATCCCATGAAAggacaaaaaaatctgaatcttTCCAGCAATAGTGCATTTTCTCGAACAAGGACTGATCCAAGCAGCCCCAGTGCCAAGAGTCCAGCTCAGGTCCTAACAGCTCAGACCCCACCGTCTCCACTGAGGAAGACCCAAGCAACCAAAACCCAAGCAACGGATGGACAAGAGGTTTTTGGCCAGTTCCTTTTAAAACCTGTCAATAGGCGTCCGTGGGATGCTATCGGGGAGCTGGAGTCCATTAACAAAGAACTGCAAGACCATAACATCAAACGCCAAGACCCAACAAGCATTGACCAAAGTATAGAGGAGCTGGATGAGGCATTGCAAAGTATTCTAGAAGTAAGCAGTACTTGCACAGAGCCTAAGCAGTCTGGAACTACTTCGCAAAAAAGCATAAAGAGAGGCATTGGTAACCAACTGCAAAGTCCAGAGCACCGATTGAAGGAAGTTAACTTAAATATTAGGTCCGATGTGGAGAGCAGGGGCAAGATGGAAATGGATCAAGAACACGGGGAGTTAAGAAGTGCCTTCTCCAGACCAAAGGGGAGGATAGCAAAttctgacagagcacagagtcaaGAGATGTCCGAGATATCCGTACCCAAAGCCGACACCAGTTTTGTAAGCTATGAGGTCTTGCAGAGAATTCATAGTGACCCCAGAGGACAACGACTAGATATTCCAGTGGCAAAAGAGGCCTTACTCAAAGACGTTGGCCTTACGGTCTACACAGCGATTCCAGACACAGTAACGTCGGGATCTCCTCCGGGTTTAAGCCCTGAGTCCCCAATGCTTACAAGTCCTTCTGACAACTCGGAATCGTGTGAGGCCTTACACATCACCTCGTCAGATAGTGGGGGCGATCGAAGCAGAAACAGCCCGGAATTCATCATGGTGGATCAGATGGATCAGAAGAGTTTGAGCAGTCAAACCTGCATCACAGCTAAACTGGACCATGAGGAAGAGACAGATCAAAGCAGGCCCAAAGTAGTCACCAGCCCACCGAGGTCATCTCACATCTATATTGCCAGGAGACAGCATTTTAGGTTTCAAGGAAACCATtccagtgctgctgctgcttctaatgatgatgacgatgatgacgGGTATACAGAATATCTCAGCTGGAGTAACGAGAAGACGTTAGCAGATGAACACCTGGAGACTCTGTTGAGTCAGGAGAAGGCAAACAGCTTGCCAACGGAAGATCTTAGCAAACTCTACAAGGTGCAGTGTGCTCAGGGCATACCTGAGCATGAGTCGCTTGAACAGAGGGCAGCCAGGATCTTGGGCATTAGCGTTCCAGCCGAATCTTTAGTCGTCGGTCAGAATGATGATAAGAATGATGTTAAGCAAGATGAAGGAAATGTAGATAGCACAAATGAAACAATATCAGCTATGCATATTAAGGAAGAGATAAGCCTAAATGAAGAAGACACACAGCATGTAGAGAGGAGTAGAGAGTATGACAAGAAAGTTGTAGAGTCATTGGCTTGCAGCCATACTAATGAACTGACAATAGAAAAGGAAGATCCAGGAATTAGAGAAGATGACACCTCAAAAGAAAATCCAGCCCACTTCAGTGCAGAGATCCACACTGGTCCTGCAGTGCTGGACCTGCCCGAGTTCCCCCCCAATAACCTGCGCTTGTCTTTACCAGCGTCCGAGGATGAAGAACTGGCCTTAAGTGTTTGTGGAGGTGAGAAAAAGACTTGGCTCGTTGACGATGACGAGCTTTCTGAAGAGCCTCAGGATGAGTCAAGTGAACATCCCCCGTTTTTTACGTTCAGCAATGAGGAATTGTCTGCACAGTACATTACTCCTGTGCTGGAGGCCGAGCCAGGATCCTGCGTCAGCACTTTcaccaaagagagagaggaagaggaggaaataGAGGAGGAAGAATCAGTTCAAGAGGAGGAAGTActagaaggagaaaaagaacaaaCTACAGAGATTGGACTAGAAGCAAGTGAATTGGAAACAAGTGAGTGGGAAGCTTGTGCTGAAACAAAGGCAGATGACAATGAGGACGTTGATAGAAGGAGTGAGGATGAGCAGGAAGATCCAAAAGAAGAAGTTCTTGAGGAAGATTCACAACAGCAACCAAAGCCAGTGAAGCGTCCAGTCCCTCAGCCTCGCAGTGGAACGGTGGCCAAGAGGGAGATCACCCTGCCAGCTTCCTTCAACATGACCACTGCTTTGGCTGCAATGGAGGATGACGATAACGATACTGAGTCTGTTTCAGACGCCTATGACCCCAGTCGAGTTGAGAGGGTGTGAACTGGGAGCCAATGTCATGGCAAGCCAATCTGTCATGCCGCGTCACTGTGACTGCCATATTCTGGCTGAGATATCTGCTACAGTCAAAGAGTTccctcttaattgtttttttggtaattattttatttgtttgtttttcgtTGGTAATACCTGTACCTTAATTTGGGACATTTTGCTTTGTACAAACAGCACCCTATGctcatattttgtatttttttatttgcttaaaaaatgaCTCTtttgagagaaaatgagagagatcTTTGTTCATCCATCTCAGGACTCAGCTATTGAGATGAATATgtattaagacaaaaaaaaaaaaaaaagaaaagacgaACCTGGAAGTGGATCAGTTTTACACCTAAAAGTTGTAAATATCTTTCTCTGCACCAGCAAATGTTGACGATTTGTCAGAATTTCACCAAACAGTTTCACGGTGCCATTGAAATATAAATACATGCCAGTTTACACACACCGTCATCTGCAGCGTTACCAAAACCAAAAACGTTCACATTATAGAagaatatgaatataatatgAAGCAATCATGATGAgccatgtgctcagtgtgttcACTTTGAGGCCGGACCAGATAGATTACACTGTGCTATAActtaaagatatataaaaatattttttgtatgtaatCTTAAATAGATAggagagaaataaatatatatgtatacagatatatatatatagattatatatatatatatagatatagaagtTGGCATTCATTATAAAATTCATTATACAGCTATATGTGTTAAAATCCATTTGTTAATCTCAATTGTGAGCTAGTATTTAAATAAACCTACACCATTTCCAACCTTTCTCATTTAAAATACATCAATCAGCCATAATATTAAGACCACCTGCTTGATTATACACTTACTATTCATGTTTCCACTATAGGAAATTAGTCTGGTATTCTGTACACTTGTTAACCCCTtaaacaggccaggatttttgtcaattttctgcctgacattacaacACTAAATCTTAAGGATTTCTATTCCAGCATTACATTAAAAGATTTTATGTTTAATGAGGAACGTTACTGAAAATCATACTTGTAATTGTCatagaaagtatagaaaaatagaataaataaaaaatagtcaatctgcaactgtcaaaatcTAATGAATAGAATCATAAAAATGTCTCTTtcctaaacttcattttaaaatcagtacaaATCAAACAGTGCATGTCCTCCAAAGCTTtagttttgtctagtttttacctCTATTTTCAAAAATGGGTTTTAAAtgtgggttgattcctgttactgatctggaattattaagtgaagctataattaaatataataatctatcattaaataaaaaaaaaatacaaactgcTCCTAAAGGGTCAGTGGAGCTGATGCACAATAATATAAGTATAATGAGTGTAAAAACATGGAGGTTGTGTTAACACTGTGGCTGATTGCAATTTCTAAGCTTCAGTGACTCCTGTCCTGTATGACACTGATGTACCTGGTAATACCAAGGTTTCATTAAGCCCGTCAGTCCCCAGTGTTATTCTGTACATAACTCTGGACCCGTATCCGTCATTTTTCATATCCAGTGATTTAAGATGTTTTTCTCTGCTCTGACTCATATGCATCAATATCTTATATGCAATACAGGGCTTATGATTAACGACAGTAGCCAGCAGAATCACATAAACACATCGCTCATCGTGCCACACATGCAAAAcgaatgtgtatttattttttaccaagcAATcctcagactgtaaaaaagaaaatattgtattttaagcAGTACTTGAGAATTAACCGTGTAATTTAATTAGCTTGATTGCAATCACTTTGCGTATGTCGTGTGTGAGTATGTGGTGTTTCCTGCGGAGTCTGTGCAGTGAGTGGGGTTTTCAGGTGGCGTCGGTGTGCCTTTTGATGCAGAATTGACGAAATATCTTATATGTTGTGTTGTCTTTATCTTGTTCGGGTCATCATGATGACATCAAGTTAGAGCTTCTCGTTTGTACCACTTTGTCTTTAAATGGTTCAAATGGTGAATATGAGTGTTGTCATTGAGTAACCACTTTTGGTTTTCTAAAGAACTGTATTTGTAATAAAGTTgtctatgttcacacagcaggtaaaactGGCCCAAATCCAATTTTCCCAATCTACTTCCACTATATCCGACATTTGTTTTTGCTTCTAAACTGAAGGAGCAGTGCTTCACGTGAAGATTTGGTTTCATCTTTGCCAGCATCACATCAGCATCACATCAGGGAGATCAGTGTCTGACGACTAGAATTAATACAGAGAATTAAATCAAGCTCACTGTAAAAAGATCTTGTGGGCTCATTGTGCACTTTAGAAATTTCTTCAAACTATAATTACgtttaaatatttgaaatgtGTTACTTTAATAATCCAGCACTAAAAAACATTCATCACTGGTGTTGTCTATTTTGTCCTTCTCCTTACACCTATTTTTAGTGGCATTGCTGTGTCCTAAACATTTAtagttttagatttttctttgaATTTTCAGCAGCGCCTTCTTGTGGCTGTATTATGCTactgttttacacatttctttaaattaaaattaatgttaaattaaattaaaagtaaaaataaaagtatgttaCCTCGTCATCCTGACACTGAATCCCTTACTCAATGCtgtctttcattttttaattttcctcaCGTCCATTTCTTTAATGAAAGGCACATAAATTCAAATCTTGTTCAGACTATTGCTATTTCCATTGCTGCATATCAGACTTATCAGATTTTAGTACCACAAATAAAAGAGGCCCAAATCAGAATTGACAATATCAGATTGAAAGTGGCTTTTGGCGTTAAAACTGCCACACAgaaaactctgtaaaaaaaaattaataacgTTTGAATTTGGACCACTTTTACGTGATGTGTGAACCTAGACTAATACaagggctggacaataattcaatatatcatgataggatattttttattatttgttagatAACTGACTGACGTTCATTGCGGGGCTTTTTACGTAAATTGGcccatttattttgtttggtttgaggcttgatatcaaaattatatcaatatattgtgatctAAGTCTCGGCTGTATCGTCCAGCTCTACCTTTTACAAACATTGTTCAGTATGGAACCAGAAGTGGTTCTTCTACTGCATTGCTAATTTAAAGCACCTTTAGAGTGTAGGGTATATTCATGACATTTCTGCCAAACAACATCAGCCATTAATACGTATTATAGCACTATCAGTATCAGTGTAGCTGCTTGTAAATGCTGTGCAATGTGGGCAAATGTATGTGAATTCCAGTAATATGAGAATATCAATATGATATGATGTTGcatatatgatttaatatgtCATAAGGTGACTTAGGCCATGACCCATAAAgagtattattataaaaaacacttcttaAAAGCAAATCACACAGAAATAATCATAATCCTGTTATTTACTGTTAAATGGTCATTGTCATCAGTGTATAGTTTCTCTGTAAGCCTTTGTAAGAGGCTGTGCAACATTAACAGCTACAGTGTTGCCAACAGTACGTTTCAGTTAATATTCTTTTCTATTTTCATACAGAAACTGTGTACGTCTGTTTTTGTACAAGTTGGTATTAATGTGTGTTCCCTTTCCGCATGAGTTACAGTTATCATGGGTGAAACTGGGGACTGAGGTTTTGCATATAATTGCATTTGGTACTATATACTacaaaaatatcattatatttcaTAATGCATATTTGTATCTTCCGAAAAGAAAGCTTTGACAGATATTTAAATtcagaatattatttttaaagtattttaaagaaGGGAAGTGTTTATTATATAGGAGCGTATTTCAAGCAATCAGTTTTAAACACAATGTTGGGAAAGTGCTTTCTTTGTACATTACAGCAAAGTATTCATTAATAAACTCTTTGCATGGACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73174 lncRNA downstream 137985 24810820 ~ 24812627 (-) True G54276
TU73099 lncRNA downstream 210557 24739836 ~ 24740055 (-) True G54239
TU73098 lncRNA downstream 224268 24725797 ~ 24726344 (-) True G54238
TU73097 lncRNA downstream 232425 24717481 ~ 24718187 (-) True G54237
XR_002650050.1 lncRNA downstream 313237 24616045 ~ 24637375 (-) True LOC111192640
XR_002650052.1 lncRNA upstream 101056 25099176 ~ 25291974 (-) True LOC111192641
TU73250 lncRNA upstream 226900 25225020 ~ 25226203 (-) True G54338
TU73284 lncRNA upstream 335280 25333400 ~ 25346697 (-) True G54358
TU73288 lncRNA upstream 339646 25337766 ~ 25340880 (-) False G54358
TU73290 lncRNA upstream 343577 25341697 ~ 25343413 (-) True G54360
XM_022670382.1 mRNA downstream 30022 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA downstream 48195 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA downstream 72591 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA downstream 72591 24786251 ~ 24878021 (-) False svil
XM_022670380.1 mRNA downstream 72591 24786251 ~ 24878021 (-) False svil
XM_022670391.1 mRNA upstream 73334 25071454 ~ 25099104 (-) True mtpap
XM_007260773.3 mRNA upstream 387570 25385690 ~ 25390707 (-) True ppic
XM_022670901.1 mRNA upstream 452992 25451112 ~ 25471966 (-) True cep120
XM_007260802.3 mRNA upstream 475765 25473885 ~ 25483984 (-) True LOC103046226
XM_007260770.3 mRNA upstream 488442 25486562 ~ 25505546 (-) True LOC103037139
XR_002650051.1 other downstream 72590 24787194 ~ 24878022 (-) False svil
TU73059 other downstream 598676 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 1858637 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 2103275 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 4131203 20817839 ~ 20819409 (-) True G53607
trnak-uuu other upstream 568154 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 569021 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 569273 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 569525 25567645 ~ 25567717 (-) True trnak-uuu_3
trnak-uuu_4 other upstream 569777 25567897 ~ 25567969 (-) True trnak-uuu_4

Expression Profile