RNA id: TU73250


Basic Information

Item Value
RNA id TU73250
length 477
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G54338
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25225020 ~ 25226203 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acgcaattgcaaacaaaaggggatttattaacaaaaacagatacaaaataaacagggaTTTACAGATAACAGGACTaaggaaactggggaaaacatggaacactgacagacgataaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagcggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagtaccaaagaacacaggtgagtggaaaaacacaggggcacgggtcacgtgggacaacacaggcacgaggacagacagggaacagggccaggaccttacataacccccccttaacgcgcaactccCGGGGCGCGAAAAACGAAACCCCAGGAGCAGGTCAGGAGAGGGcgaaacaaagaacaagacaagacagaactAGGACGGAGaccggacagggaactggacaggagaccgGACATGAAACGGGGGCAGGACCGGGAACGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73225 lncRNA downstream 271182 24950647 ~ 24953838 (-) False jcad
TU73174 lncRNA downstream 412393 24810820 ~ 24812627 (-) True G54276
TU73099 lncRNA downstream 484965 24739836 ~ 24740055 (-) True G54239
TU73098 lncRNA downstream 498676 24725797 ~ 24726344 (-) True G54238
TU73097 lncRNA downstream 506833 24717481 ~ 24718187 (-) True G54237
TU73284 lncRNA upstream 107197 25333400 ~ 25346697 (-) True G54358
TU73288 lncRNA upstream 111563 25337766 ~ 25340880 (-) False G54358
TU73290 lncRNA upstream 115494 25341697 ~ 25343413 (-) True G54360
TU73402 lncRNA upstream 297901 25524104 ~ 25525169 (-) True G54448
TU73401 lncRNA upstream 298316 25524519 ~ 25525169 (-) False G54448
XM_022670391.1 mRNA downstream 125916 25071454 ~ 25099104 (-) True mtpap
XM_022670385.1 mRNA downstream 226900 24950612 ~ 24998120 (-) True jcad
XM_007259653.2 mRNA downstream 245385 24950612 ~ 24979635 (-) False jcad
XM_022670384.1 mRNA downstream 347007 24786251 ~ 24878013 (-) False svil
XM_007260773.3 mRNA upstream 159487 25385690 ~ 25390707 (-) True ppic
XM_022670901.1 mRNA upstream 224909 25451112 ~ 25471966 (-) True cep120
XM_007260802.3 mRNA upstream 247682 25473885 ~ 25483984 (-) True LOC103046226
XM_007260770.3 mRNA upstream 260359 25486562 ~ 25505546 (-) True LOC103037139
XM_015608712.2 mRNA upstream 284426 25510629 ~ 25520226 (-) False LOC103035606
XR_002650051.1 other downstream 346998 24787194 ~ 24878022 (-) False svil
TU73059 other downstream 873084 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 2133045 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 2377683 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 4405611 20817839 ~ 20819409 (-) True G53607
trnak-uuu other upstream 340071 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 340938 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 341190 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 341442 25567645 ~ 25567717 (-) True trnak-uuu_3
trnak-uuu_4 other upstream 341694 25567897 ~ 25567969 (-) True trnak-uuu_4

Expression Profile