RNA id: TU73290


Basic Information

Item Value
RNA id TU73290
length 1588
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G54360
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25341697 ~ 25343413 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcctgaaattaattaattatttttctgttttcctatatcgccaagtatatcgttatcgtaaaaataccctgaaaaaaatagtaaaagtgAAACTAAGTTACTAATGCATTACACCCTTTTAGATTTAATTCGTAAtgcattaaatgttttattcatgctttattcttattttatatttccttttttattgttattcccTTACATGCttttctctttgtattttctaatttgtaatgCACTTTGAATGATCATTTTgtgtgaaaggtgctatatatgTAAACATGCCTTGCTTCACGAAAATTTGCCTGAAGTATTATTCACATTCATAATCAAAATATACAGTTAAGCCCTGCTGAATATGCAATATAAAAGTCGGCAACAATTCTTAAAGTCATCTCCTTATATCGCACAATATATCAGTATTTTAATTATCAGACACTGAACTAGTGGATGTATTGGTTAACATTCCCACCAACGTAAAGAATGCTTGGAAGTATGTGGGCAACAAGGAGTTGCAACGTAATATATGAAATGAATTGTTACAAACATCTTTATTATAAGAAAATATTTACAATGCTAATAAAGAAATTATGGTGTATAGTGTCGGATGTTCCCAAAGACATATGTGACACACTGAGAGGTGttaaaGCTGGTAAGATTAAATATGACACAAAAACAACCCTAAATACCACAGGATGAcaggatgagaaaaaaaaaaaagattgcttATTAGCTACTACCACTAATGTACActtctacactacactaccacCATCATCACAAGAATCCctccacaaaacaaacaaacatgaatCTAAAAACATACATGAAGATGTGAATTGTAGCTGCGAACAGTAATACGTCAAGTGAAGCACTATTGTGCTCATGTttcattaaaaatgtgaaagtaaGGCAAACAATAAAGAGCTCATTATCAGCATGGGAATATCTGATGCACGTTATGCTAATGGGACAGGTACTTAAAAACCACAGATGatgggagaaagaaaaaagcaaaaaaaaaaaaaaaactcaaatcagAGCCAAGGGTCCTACCTCCTCAATCTCCTTTGTGGGGCATGACAGggaaaatgcaaaaattaaaaGAGGCTGATAATGTTCTGTGGTTAAAGAAATCAATAATTTATGAACTCATCAAGCAGAACAGCGGCTTTAGAGGAGATATGAATGAACTAAAGCAGGAGAAAGGCAGCATGCTTCACAGTCAACATCAGCACCAGGGCTGTCTCTACCAAGTGTTGATGCTGAAAACAACTAGAGGTTTTTGTCGTGGCTCAAGGTTTATTTTCTGAGAAGATTTACAGAGACTGTGGCTTATCTTCTTTACCATAGAGAATAGGGAAATAGGGATgcactaaattaaatatttgcatAAATTTGGCCAAAAGCAGAATAGCAAACATGGTATTTTTTACAGGCTTTTATCAAAATTCTCTCTACTAAATGAATTACATAGTAcactagtgcatcccaaaaacTAGAAtaccattaaaaagttactttatctTCGTAATTTAGGTcaactgtatattatatatatatgcattacacacagagtgatttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73288 lncRNA downstream 817 25337766 ~ 25340880 (-) False G54358
XR_002650052.1 lncRNA downstream 49723 25099176 ~ 25291974 (-) True LOC111192641
TU73250 lncRNA downstream 115494 25225020 ~ 25226203 (-) True G54338
TU73225 lncRNA downstream 387859 24950647 ~ 24953838 (-) False jcad
TU73174 lncRNA downstream 529070 24810820 ~ 24812627 (-) True G54276
TU73402 lncRNA upstream 180691 25524104 ~ 25525169 (-) True G54448
TU73401 lncRNA upstream 181106 25524519 ~ 25525169 (-) False G54448
TU73420 lncRNA upstream 206908 25550321 ~ 25562139 (-) False fam240a
TU73430 lncRNA upstream 259004 25602417 ~ 25605207 (-) True G54466
TU73444 lncRNA upstream 286382 25629795 ~ 25633221 (-) True G54471
XM_022670391.1 mRNA downstream 242593 25071454 ~ 25099104 (-) True mtpap
XM_022670385.1 mRNA downstream 343577 24950612 ~ 24998120 (-) True jcad
XM_007259653.2 mRNA downstream 362062 24950612 ~ 24979635 (-) False jcad
XM_022670384.1 mRNA downstream 463684 24786251 ~ 24878013 (-) False svil
XM_007260773.3 mRNA upstream 42277 25385690 ~ 25390707 (-) True ppic
XM_022670901.1 mRNA upstream 107699 25451112 ~ 25471966 (-) True cep120
XM_007260802.3 mRNA upstream 130472 25473885 ~ 25483984 (-) True LOC103046226
XM_007260770.3 mRNA upstream 143149 25486562 ~ 25505546 (-) True LOC103037139
XM_015608712.2 mRNA upstream 167216 25510629 ~ 25520226 (-) False LOC103035606
XR_002650051.1 other downstream 463675 24787194 ~ 24878022 (-) False svil
TU73059 other downstream 989761 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 2249722 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 2494360 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 4522288 20817839 ~ 20819409 (-) True G53607
trnak-uuu other upstream 222861 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 223728 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 223980 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 224232 25567645 ~ 25567717 (-) True trnak-uuu_3
trnak-uuu_4 other upstream 224484 25567897 ~ 25567969 (-) True trnak-uuu_4

Expression Profile