RNA id: TU73420



Basic Information


Item Value
RNA id TU73420
length 465
lncRNA type sense_over
GC content 0.41
exon number 3
gene id fam240a
representative False

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25549350 ~ 25562139 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTCATCTGATGCAGCATGGTGCACAGTGGGAATTGTGGCACGATTCCACTGCAGCTTCCAAGCACATCTCAGTCATTACTTACACCCCCTGCACAGTGGGTTCTAGGACACACTTGTCTGGACAGGGAGCCGGGAAAGTAATCATCCATTTTAAAGGAGATGAATGCAGCCTTGATTCATGACAAACTGTTCATCAAAACATTCTGGGAGCAAAAAATTGTCAGTCATGTACAGTTGACGGAAAACGAGGAACAGAGGATGAAGAATAGTGCACTGTCAAAGCTCCGTGATGAATGGCTCATAAGACTTGAAAGTCGAACAAAGCATCTCAAGAACTTCCGTGACGCACAGGCCGTAAAACTAACATCAGCCAAGCAAACAGATAAAGAATGATAAGTTGTACATTTCTAATGTAAAATTATCCAAATGTTTCTTAATAATACAGATCAATAAAACATCACAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73402 lncRNA downstream 25152 25524104 ~ 25525169 (-) True G54448
TU73401 lncRNA downstream 25152 25524519 ~ 25525169 (-) False G54448
TU73284 lncRNA downstream 203624 25333400 ~ 25346697 (-) True G54358
TU73290 lncRNA downstream 206908 25341697 ~ 25343413 (-) True G54360
TU73288 lncRNA downstream 209441 25337766 ~ 25340880 (-) False G54358
TU73430 lncRNA upstream 40278 25602417 ~ 25605207 (-) True G54466
TU73444 lncRNA upstream 67656 25629795 ~ 25633221 (-) True G54471
TU73463 lncRNA upstream 87315 25649454 ~ 25694995 (-) True G54486
TU73467 lncRNA upstream 166244 25728383 ~ 25728601 (-) True G54490
TU73475 lncRNA upstream 192583 25754722 ~ 25755060 (-) True G54498
XM_007260763.3 mRNA downstream 5794 25541306 ~ 25544527 (-) True LOC103035302
XM_007260769.2 mRNA downstream 9922 25532060 ~ 25540399 (-) True LOC103036837
XM_015608712.2 mRNA downstream 30095 25510629 ~ 25520226 (-) False LOC103035606
XM_007260765.3 mRNA downstream 30095 25510629 ~ 25520226 (-) False LOC103035606
XM_007260767.3 mRNA downstream 32730 25510629 ~ 25517591 (-) True LOC103035606
XM_015607074.2 mRNA upstream 49983 25612122 ~ 25621265 (-) True lrrc2
XM_007254050.3 mRNA upstream 49983 25612122 ~ 25619657 (-) False lrrc2
XM_022670401.1 mRNA upstream 49983 25612122 ~ 25619657 (-) False lrrc2
XM_007254049.3 mRNA upstream 49983 25612122 ~ 25619657 (-) False lrrc2
XM_007254052.3 mRNA upstream 218290 25780429 ~ 25966065 (-) True efna5
XR_002650051.1 other downstream 672299 24787194 ~ 24878022 (-) False svil
TU73059 other downstream 1198385 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 2458346 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 2702984 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 4730912 20817839 ~ 20819409 (-) True G53607
trnak-uuu other upstream 4135 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 5002 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 5254 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 5506 25567645 ~ 25567717 (-) True trnak-uuu_3
trnak-uuu_4 other upstream 5758 25567897 ~ 25567969 (-) True trnak-uuu_4

Expression Profile