RNA id: XM_022670400.1


Basic Information

Item Value
RNA id XM_022670400.1
length 1364
RNA type mRNA
GC content 0.34
exon number 3
gene id fam240a
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25549350 ~ 25562139 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATTACTTACACCCCCTGCACAGTGGGTTCTAGGACACACTTGTCTGGACAGGGAGCCGGGAAAGTAATCATCCATTTTAAAGGAGATGAATGCAGCCTTGATTCATGACAAACTGTTCATCAAAACATTCTGGGAGCAAAAAATTGTCAGTCATGTACAGTTGACGGAAAACGAGGAACAGAGGATGAAGAATAGTGCACTGTCAAAGCTCCGTGATGAATGGCTCATAAGACTTGAAAGTCGAACAAAGCATCTCAAGAACTTCCGTGACGCACAGGCCGTAAAACTAACATCAGCCAAGCAAACAGATAAAGAATGATAAGTTGTACATTTCTAATGTAAAATTATCCAAATGTTTCTTAATAATACAGATCAATAAAACATCACAAAATATCTCTGCCTCCTCTCTCATTCATATAACATTGTGTCTGTTCAAGAAGCTGGGAAGTCTGGATGTATACAGTAACTTTTTAAGAGCTTAATAAAAATTACTAACCACCAAGACCCAGTAATCAGAAAAGGCAGAGCCCCACACCCTTGTCATCACAGTCCTTTACAACAGATGGTGTGAAGGACAGAAGCAAGTGAATCTGTCTGACTGCCAAAGTCATGTCAGACAAGGACAGCTCAATTTTTTACACCCAGTCAACACAGTTCATTTGTATTTCTGTCTAATACATTTAGGGATGGTCTATTTTATAAAGAACTATTGTTGTTtactaatataaaaacaaaggcaaataaAACTGCAGACATTTCCTTTTCCAAAAGTTCAAGAAATTCATATattctacagtaaaaaaaaaagagcataacatccaataaaaaataaatttaattcttTGGTCCTagcaaaccaaaaacaaaacttagAGCTACCTGcccaaaaaaaatagttgctgACCCCCCATTAATCATTACTTTGGAGTTTGCATATACTCCTTTACATACTTAGCcatcattattttcattatatttacCATCACAACTATAACTATAAATCAGTACACCTAATCTTTGAGGGTGATTGGATTGGTCATCTGATGTTTTgcacttttgtagttttttaatatcttaaacTTTTGGAGATTTTTGTAAAGAAACCTTATTCTGGAAGAATCACAATAAGAAGACAAATCCTATTAAGGGCATAAGAAAGTGTAACTAAAATTGAAACTGGAAACTTCCAacagaaagcaaaaaaataattaattcaatcAAGAGacaactgtattttttattttgggtggggaaaaatgttctaaatgtatGTACATAAATCACTGTAAAAATCATCTTTACCATAAACAGTGAATGTTCCACATGATCAGATAAGTTCACATATCAAAACAAGTGTCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73402 lncRNA downstream 24181 25524104 ~ 25525169 (-) True G54448
TU73401 lncRNA downstream 24181 25524519 ~ 25525169 (-) False G54448
TU73284 lncRNA downstream 202653 25333400 ~ 25346697 (-) True G54358
TU73430 lncRNA upstream 40350 25602417 ~ 25605207 (-) True G54466
TU73444 lncRNA upstream 67728 25629795 ~ 25633221 (-) True G54471
TU73463 lncRNA upstream 87387 25649454 ~ 25694995 (-) True G54486
TU73467 lncRNA upstream 166316 25728383 ~ 25728601 (-) True G54490
TU73475 lncRNA upstream 192655 25754722 ~ 25755060 (-) True G54498
XM_007260763.3 mRNA downstream 4823 25541306 ~ 25544527 (-) True LOC103035302
XM_007260769.2 mRNA downstream 8951 25532060 ~ 25540399 (-) True LOC103036837
XM_015608712.2 mRNA downstream 29124 25510629 ~ 25520226 (-) False LOC103035606
XM_007260765.3 mRNA downstream 29124 25510629 ~ 25520226 (-) False LOC103035606
XM_007260767.3 mRNA downstream 31759 25510629 ~ 25517591 (-) True LOC103035606
XM_015607074.2 mRNA upstream 50055 25612122 ~ 25621265 (-) True lrrc2
XM_007254050.3 mRNA upstream 50055 25612122 ~ 25619657 (-) False lrrc2
XM_022670401.1 mRNA upstream 50055 25612122 ~ 25619657 (-) False lrrc2
XM_007254049.3 mRNA upstream 50055 25612122 ~ 25619657 (-) False lrrc2
XM_007254052.3 mRNA upstream 218362 25780429 ~ 25966065 (-) True efna5
XR_002650051.1 other downstream 671328 24787194 ~ 24878022 (-) False svil
TU73059 other downstream 1197414 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 2457375 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 2702013 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 4729941 20817839 ~ 20819409 (-) True G53607
trnak-uuu other upstream 4207 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 5074 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 5326 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 5578 25567645 ~ 25567717 (-) True trnak-uuu_3
trnak-uuu_4 other upstream 5830 25567897 ~ 25567969 (-) True trnak-uuu_4

Expression Profile