RNA id: TU73430


Basic Information

Item Value
RNA id TU73430
length 362
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G54466
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25602417 ~ 25605207 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCCTTGAATGAGCCCATTCATAAGAAATGTGTGCTGAGGAAAGGTTTCATGTAACACCGTCAGCATTGGGGTTGTAAGCAGGCCCCATGAAAAGAACTCCAAAAAGATGACCACAACTGCATGGGTCACCTTTGCCCGACCAACACCACGTGTGGCGGAGTCTCTGATGTTTTTGACCAACATAATGCCGTTGGTCGCTTGATTCTGATTTCCCTGGGTCATCTCACATTGTGTTGCAAGTTCCAACGATAAAACCCATCGTATAAAACCTGAAAAATGCGTCCACCAATGATTTAAAACCGCTCAACCCCAAACAACTTCACCGGCAGCGTTAACTTTCGTAGCTAGCAAAGTTACCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73420 lncRNA downstream 40278 25550321 ~ 25562139 (-) False fam240a
TU73402 lncRNA downstream 77248 25524104 ~ 25525169 (-) True G54448
TU73401 lncRNA downstream 77248 25524519 ~ 25525169 (-) False G54448
TU73284 lncRNA downstream 255720 25333400 ~ 25346697 (-) True G54358
TU73444 lncRNA upstream 24588 25629795 ~ 25633221 (-) True G54471
TU73463 lncRNA upstream 44247 25649454 ~ 25694995 (-) True G54486
TU73467 lncRNA upstream 123176 25728383 ~ 25728601 (-) True G54490
TU73475 lncRNA upstream 149515 25754722 ~ 25755060 (-) True G54498
TU73505 lncRNA upstream 334495 25939702 ~ 25994673 (-) True G54524
XM_022670400.1 mRNA downstream 40350 25549350 ~ 25562067 (-) True fam240a
XM_007260763.3 mRNA downstream 57890 25541306 ~ 25544527 (-) True LOC103035302
XM_007260769.2 mRNA downstream 62018 25532060 ~ 25540399 (-) True LOC103036837
XM_015608712.2 mRNA downstream 82191 25510629 ~ 25520226 (-) False LOC103035606
XM_015607074.2 mRNA upstream 6915 25612122 ~ 25621265 (-) True lrrc2
XM_007254050.3 mRNA upstream 6915 25612122 ~ 25619657 (-) False lrrc2
XM_022670401.1 mRNA upstream 6915 25612122 ~ 25619657 (-) False lrrc2
XM_007254049.3 mRNA upstream 6915 25612122 ~ 25619657 (-) False lrrc2
XM_007254052.3 mRNA upstream 175222 25780429 ~ 25966065 (-) True efna5
trnak-uuu_38 other downstream 6420 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 7253 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 8086 25594259 ~ 25594331 (-) True trnak-uuu_36
trnak-uuu_35 other downstream 9500 25592845 ~ 25592917 (-) True trnak-uuu_35
trnak-uuu_34 other downstream 10912 25591433 ~ 25591505 (-) True trnak-uuu_34
TU73603 other upstream 953199 26558406 ~ 26569931 (-) True LOC103042298
TU73608 other upstream 968193 26573400 ~ 26575743 (-) True ccl28
TU73957 other upstream 1561479 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 1864011 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 2123504 27728711 ~ 27731079 (-) True G54947

Expression Profile