RNA id: TU73463


Basic Information

Item Value
RNA id TU73463
length 1238
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G54486
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25649454 ~ 25694995 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGATGACAAatcagATTGCTACTGATGACAAATCAGATTGCTACTGATGACAAAATGACACTAAATATACTCTGCTCTCTTGTACAACGTTTCACACCCCCTCCACAATCTACTGCTCAGTAGATTCATCCAGCTTCGCTGCAGCTAAAGACAGTGCAGGGCCTTGATTTTACCTACAAGAATCACACAACACAACTCATCTTCCCAGTGAACATGTCCAAATTGTGTTGTCATCCCTCCCTAATGTCATGTGACTATCTAttattccatccatccatccaaaccatCCAATCAatcatctatctgtctcttttccTGAACAAATCCGTACAATTACTGGAGAGCCAGCATCCAGACCTGTGTTCTTCTAACCAACAACATACGAAATCACATTTTGACTACAAATTAAAGcatctgtttatttgtatttattctaatgttatatagtgtTTTACTGTGGAGATCAATAGTAttcactttttatattttcactgCTGCACAAGACTTTTGCAGAGTACAGTACATCCGTGAAAAAGCCCTGTATGTCAAGAGAATCCACCACATTTTCATTCACGAAGACACTAATATAGTTTCCTgtggtttctttctttttgggcGAAAACAATGAGGAATGATTATTGAATGGTTaactttgtaaataaaaaaatatataaataaaaacaacataaaatgaCAATTTGAACTGACATATTGACAGCTTTGCCTAAGCTCACATAGCAATAAAAGTACAAACCAAGAAAACCAGTTTCACTggaatgtttaataaatgtggTGATCTAGAAGAGTCTAGAACTTAGTTTCAGATCACTGATTTTACAGTGCAAAAGCCTGTATTGTATTGCTGTGGAAAACAGAGGGAGATTGGCAGCCAGCCACTGTGAATGTTCTTGAAGTTATTACTCCTCCTGGCATCACTCTGTGCTTCCATAGTGGTTAACATTGCTTGTCGTATCCTGTAAGGTCGTGTGTGAGATTTCCTCTTTGTTTCCCTTGGGCTGAGCCTTGAAGAAGTCTGATACACAGAAAACCTGAAAGTAGGAGAAAAGTGAcagttttataataaagtaaaacaatatGGGTCAGTACACAACACACATTGTTTAACACCATGTAACAATACAGCTTTCGAGATTGATTCTGAATAAATACATCATTATAAACATAGAGgacttttaactttaaatgtaatgtaacctTTAGTTATCTTTGGTGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73444 lncRNA downstream 16233 25629795 ~ 25633221 (-) True G54471
TU73430 lncRNA downstream 44247 25602417 ~ 25605207 (-) True G54466
TU73420 lncRNA downstream 87315 25550321 ~ 25562139 (-) False fam240a
TU73402 lncRNA downstream 124285 25524104 ~ 25525169 (-) True G54448
TU73401 lncRNA downstream 124285 25524519 ~ 25525169 (-) False G54448
TU73467 lncRNA upstream 33388 25728383 ~ 25728601 (-) True G54490
TU73475 lncRNA upstream 59727 25754722 ~ 25755060 (-) True G54498
TU73505 lncRNA upstream 244707 25939702 ~ 25994673 (-) True G54524
TU73574 lncRNA upstream 327855 26022850 ~ 26023104 (-) True G54572
TU73579 lncRNA upstream 444321 26139316 ~ 26177147 (-) True G54574
XM_015607074.2 mRNA downstream 28189 25612122 ~ 25621265 (-) True lrrc2
XM_007254050.3 mRNA downstream 29797 25612122 ~ 25619657 (-) False lrrc2
XM_022670401.1 mRNA downstream 29797 25612122 ~ 25619657 (-) False lrrc2
XM_007254049.3 mRNA downstream 29797 25612122 ~ 25619657 (-) False lrrc2
XM_022670400.1 mRNA downstream 87387 25549350 ~ 25562067 (-) True fam240a
XM_007254052.3 mRNA upstream 85434 25780429 ~ 25966065 (-) True efna5
XM_007254053.3 mRNA upstream 400116 26095111 ~ 26529204 (-) True fbxl17
XM_022670403.1 mRNA upstream 493111 26188106 ~ 26529204 (-) False fbxl17
XM_007254067.3 mRNA upstream 864906 26559901 ~ 26569939 (-) False LOC103042298
XM_022670413.1 mRNA upstream 878687 26573682 ~ 26575743 (-) False ccl28
trnak-uuu_38 other downstream 53457 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 54290 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 55123 25594259 ~ 25594331 (-) True trnak-uuu_36
trnak-uuu_35 other downstream 56537 25592845 ~ 25592917 (-) True trnak-uuu_35
trnak-uuu_34 other downstream 57949 25591433 ~ 25591505 (-) True trnak-uuu_34
TU73603 other upstream 863411 26558406 ~ 26569931 (-) True LOC103042298
TU73608 other upstream 878405 26573400 ~ 26575743 (-) True ccl28
TU73957 other upstream 1471691 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 1774223 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 2033716 27728711 ~ 27731079 (-) True G54947

Expression Profile