RNA id: TU73475



Basic Information


Item Value
RNA id TU73475
length 339
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G54498
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25754722 ~ 25755060 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tatgacgtgacacagaggccatttatcttcaacatgggaaagacaaaggaacataccattcaagtgaggcagatgtgtgttgaccttcacaagtcaggcaatggctacaagaaaatcgctactcgcctacacctgtccatatctactgtcagaggaattattaagaagtttaaaacaactggaacagtggtaaacaagcctggacgaggacacaagtttattttgccaccacgcacagtgaggaggatgataagagaaataaaaagttctccaaagctcactgttacagaattgcaacaaatggtagcttcttggggtcacaaagtctccaaaacaacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73467 lncRNA downstream 26121 25728383 ~ 25728601 (-) True G54490
TU73463 lncRNA downstream 59727 25649454 ~ 25694995 (-) True G54486
TU73444 lncRNA downstream 121501 25629795 ~ 25633221 (-) True G54471
TU73430 lncRNA downstream 149515 25602417 ~ 25605207 (-) True G54466
TU73420 lncRNA downstream 192583 25550321 ~ 25562139 (-) False fam240a
TU73505 lncRNA upstream 184642 25939702 ~ 25994673 (-) True G54524
TU73574 lncRNA upstream 267790 26022850 ~ 26023104 (-) True G54572
TU73579 lncRNA upstream 384256 26139316 ~ 26177147 (-) True G54574
TU73585 lncRNA upstream 559532 26314592 ~ 26320493 (-) True G54580
TU73597 lncRNA upstream 791012 26546072 ~ 26551536 (-) True G54592
XM_015607074.2 mRNA downstream 133457 25612122 ~ 25621265 (-) True lrrc2
XM_007254050.3 mRNA downstream 135065 25612122 ~ 25619657 (-) False lrrc2
XM_022670401.1 mRNA downstream 135065 25612122 ~ 25619657 (-) False lrrc2
XM_007254049.3 mRNA downstream 135065 25612122 ~ 25619657 (-) False lrrc2
XM_022670400.1 mRNA downstream 192655 25549350 ~ 25562067 (-) True fam240a
XM_007254052.3 mRNA upstream 25369 25780429 ~ 25966065 (-) True efna5
XM_007254053.3 mRNA upstream 340051 26095111 ~ 26529204 (-) True fbxl17
XM_022670403.1 mRNA upstream 433046 26188106 ~ 26529204 (-) False fbxl17
XM_007254067.3 mRNA upstream 804841 26559901 ~ 26569939 (-) False LOC103042298
XM_022670413.1 mRNA upstream 818622 26573682 ~ 26575743 (-) False ccl28
trnak-uuu_38 other downstream 158725 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 159558 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 160391 25594259 ~ 25594331 (-) True trnak-uuu_36
trnak-uuu_35 other downstream 161805 25592845 ~ 25592917 (-) True trnak-uuu_35
trnak-uuu_34 other downstream 163217 25591433 ~ 25591505 (-) True trnak-uuu_34
TU73603 other upstream 803346 26558406 ~ 26569931 (-) True LOC103042298
TU73608 other upstream 818340 26573400 ~ 26575743 (-) True ccl28
TU73957 other upstream 1411626 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 1714158 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 1973651 27728711 ~ 27731079 (-) True G54947

Expression Profile