RNA id: TU73505


Basic Information

Item Value
RNA id TU73505
length 415
lncRNA type sense_over
GC content 0.30
exon number 2
gene id G54524
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25939702 ~ 25994673 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatctcacaatccagttttacacccaaagagctgttattaatagatatatagataaaaaaaagaatacaataaaagaaatagaatatacaaaatagatagataaatatccaagaataaaaaaaataaaaaataaataaattcatatcAAATCAGATCAACTGatttatactgtgtttatataGTGCATTTACCACTGAAAAGGTAGAGCAAAGTAGCTTAGTAATAGAAATATAGTAGAAATGTGAaagcaggacagagaatcagacaaaagataaaagataaaacaaaaatatataagatatatagaACATAGAACATTTAGGACCCACAGTTGAGCTGAAAAAGGAACGAACCCTAATGAGAAACCTCACAAGCCTCACAAGGGGAAAGGGGGGACCTATCCTCCTCTGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73475 lncRNA downstream 184642 25754722 ~ 25755060 (-) True G54498
TU73467 lncRNA downstream 211101 25728383 ~ 25728601 (-) True G54490
TU73463 lncRNA downstream 244707 25649454 ~ 25694995 (-) True G54486
TU73444 lncRNA downstream 306481 25629795 ~ 25633221 (-) True G54471
TU73430 lncRNA downstream 334495 25602417 ~ 25605207 (-) True G54466
TU73574 lncRNA upstream 28177 26022850 ~ 26023104 (-) True G54572
TU73579 lncRNA upstream 144643 26139316 ~ 26177147 (-) True G54574
TU73585 lncRNA upstream 319919 26314592 ~ 26320493 (-) True G54580
TU73597 lncRNA upstream 551399 26546072 ~ 26551536 (-) True G54592
TU73609 lncRNA upstream 578727 26573400 ~ 26576425 (-) False ccl28
XM_015607074.2 mRNA downstream 318437 25612122 ~ 25621265 (-) True lrrc2
XM_007254050.3 mRNA downstream 320045 25612122 ~ 25619657 (-) False lrrc2
XM_022670401.1 mRNA downstream 320045 25612122 ~ 25619657 (-) False lrrc2
XM_007254049.3 mRNA downstream 320045 25612122 ~ 25619657 (-) False lrrc2
XM_022670400.1 mRNA downstream 377635 25549350 ~ 25562067 (-) True fam240a
XM_007254053.3 mRNA upstream 100438 26095111 ~ 26529204 (-) True fbxl17
XM_022670403.1 mRNA upstream 193433 26188106 ~ 26529204 (-) False fbxl17
XM_007254067.3 mRNA upstream 565228 26559901 ~ 26569939 (-) False LOC103042298
XM_022670413.1 mRNA upstream 579009 26573682 ~ 26575743 (-) False ccl28
XM_007254071.3 mRNA upstream 599667 26594340 ~ 26599322 (-) False ubox5
trnak-uuu_38 other downstream 343705 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 344538 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 345371 25594259 ~ 25594331 (-) True trnak-uuu_36
trnak-uuu_35 other downstream 346785 25592845 ~ 25592917 (-) True trnak-uuu_35
trnak-uuu_34 other downstream 348197 25591433 ~ 25591505 (-) True trnak-uuu_34
TU73603 other upstream 563733 26558406 ~ 26569931 (-) True LOC103042298
TU73608 other upstream 578727 26573400 ~ 26575743 (-) True ccl28
TU73957 other upstream 1172013 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 1474545 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 1734038 27728711 ~ 27731079 (-) True G54947

Expression Profile