RNA id: TU73597


Basic Information

Item Value
RNA id TU73597
length 913
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G54592
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26546072 ~ 26551536 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTGATGACTCAGATCCTTTTCAAGGTtagtacataatatatataaatgtgctaAGGAAATAAAAAGCATTGTAAGACATGGACAAACTCTTTGAAATAAAAGGTTATAAACTATTTACAGGTAAAAATTTACAACAGCTCTTTTACACGTATCAAACAGTTGCGTATATACAGCCTTCAGCTGCCAAATACAGGTAAACttgaaaagaaagacaaaaaaaaaagtttcacatttGTTTACACCGTTTAGTCGGCCACAGAGTGGTATATAATAGAAATAGAAAGTTACTGAACGCTTGTTAGGATACATTGAAATCTCTCGCTatgaacactgaaataaaagatTTTACTTCACATAAAATGTTAGCATGTCAAAGCTCCCTTTGTTTCCAAATTAGTACTTCTTTCCTAATGTATCCGTTCTCATCCCATATGGTTCTGTTTTGCAGACACGGGCAGGTTTAGTCCATAAGCAAACTCCTGTAGACTTTATGAAGATGTTACTTTCTGTATCTTGAATCTTCAAAAACAGTTTAGCGGAGTAGAGGTGCTCTAGCTTTAGGGATGGCATGGCTGTTAGCTCTGTTGGATCCAAGTGAGGTTCTGGTTCTTTTCCGAACATCCACATTATCTGAAGGATTTTGAGATTTTGCAGATTTACAGCGTTGTGCACTGGATTGTAGAATAATTctTAAAGAGTTTGATGTAGACCTGGTGTGAATTTTATTCTCCTCTAACGATAAAGACCCTGTGGATGCTCTTGATTGTCTTTTACTCTTCAGTGCCCTCAGTTTGTCACCTTGTGTGAGGCCACTGTgctgctgctcctcctcctcctcatcaacGTCATCATACTGAAGAGAAATTAAAGAACAGAATGTACTGTACATCTTCTGGTGCACTTTGTAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73585 lncRNA downstream 225579 26314592 ~ 26320493 (-) True G54580
TU73579 lncRNA downstream 368925 26139316 ~ 26177147 (-) True G54574
TU73574 lncRNA downstream 522968 26022850 ~ 26023104 (-) True G54572
TU73505 lncRNA downstream 551399 25939702 ~ 25994673 (-) True G54524
TU73475 lncRNA downstream 791012 25754722 ~ 25755060 (-) True G54498
TU73609 lncRNA upstream 21864 26573400 ~ 26576425 (-) False ccl28
TU73630 lncRNA upstream 120372 26671908 ~ 26676623 (-) True G54613
TU73640 lncRNA upstream 149060 26700596 ~ 26701882 (-) True G54623
XR_002650059.1 lncRNA upstream 175115 26726651 ~ 26734830 (-) True LOC111192648
TU73674 lncRNA upstream 197540 26749076 ~ 26749279 (-) True G54651
XM_007254053.3 mRNA downstream 16868 26095111 ~ 26529204 (-) True fbxl17
XM_022670403.1 mRNA downstream 16868 26188106 ~ 26529204 (-) False fbxl17
XM_007254052.3 mRNA downstream 580007 25780429 ~ 25966065 (-) True efna5
XM_015607074.2 mRNA downstream 924807 25612122 ~ 25621265 (-) True lrrc2
XM_007254067.3 mRNA upstream 8365 26559901 ~ 26569939 (-) False LOC103042298
XM_022670413.1 mRNA upstream 22146 26573682 ~ 26575743 (-) False ccl28
XM_007254071.3 mRNA upstream 42804 26594340 ~ 26599322 (-) False ubox5
XM_007254070.3 mRNA upstream 42804 26594340 ~ 26599322 (-) False ubox5
XM_022670408.1 mRNA upstream 42804 26594340 ~ 26598125 (-) True ubox5
trnak-uuu_38 other downstream 950075 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 950908 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 951741 25594259 ~ 25594331 (-) True trnak-uuu_36
trnak-uuu_35 other downstream 953155 25592845 ~ 25592917 (-) True trnak-uuu_35
trnak-uuu_34 other downstream 954567 25591433 ~ 25591505 (-) True trnak-uuu_34
TU73603 other upstream 6870 26558406 ~ 26569931 (-) True LOC103042298
TU73608 other upstream 21864 26573400 ~ 26575743 (-) True ccl28
TU73957 other upstream 615150 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 917682 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 1177175 27728711 ~ 27731079 (-) True G54947

Expression Profile