RNA id: XM_007254067.3


Basic Information

Item Value
RNA id XM_007254067.3
length 2198
RNA type mRNA
GC content 0.40
exon number 12
gene id LOC103042298
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26558406 ~ 26569939 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAGTGTAAGTGTGGGGCTCAGGCTAACTTCCTGCACACAGCAGTACCGTGTTTaccagtgttaaataaaccctCTCAGGGTTCAGTAACCGCCGGGCTCAGCTTCCTGAAACACGGGGGGGATGTATCTCTGTACACCCGCTCTTCAGCAGGACAGAACCAGCGGAACAGCTGCGCTCTGTACACAACATTAACCCGAGCTACAGGTTACCGGAAGAGCCGCGCTGTAGATCCAGGagcaccatgtccagaagaacCTCTTCCTTCACTTCTTCTCCTCcgtctccctctccctctccttctgTCTCCTTTCCTTTATTCAGTCCTGCTCACAGAGACGGGAGACTGCTGAAGCtcgtttctgctgttttttatgcTGTCAGTTCATTTCTAATCATCGTTATCAACAAGACTGTTCTCACCAACTACAGATTTCCTTCATACACATTCCTTGGGATTGGACAGATGGCATTCACCATCATCATTCTCTATTTAGCTAAATCATTCAAAGCTGTCAGTTTTCAGGACTTTGACAAAAGCATACCTGTAAAGATGTTTCCTTTACCGTTACTCTACGTTGGAAATCATGTCACAGGTCTGGGAAGCACAAAGAAATTAagCTTACCCATGTTCACCGTGCTCAGAAAATTCACTATTCTCCTCACAATGATAATGGAGACCAAAATATTAAGAAAGACGTTTTCACCTCAGCTGGTGTGCAGTGTACTGGCCATTGTGTTCGGGGCTCTGATCGCTGCAAGCTCTGACCTTGCTTTTGATGCAGAGGGATACACTTTTGTTCTCCTCAATGATGTCTTTACAGCTGCCAGCGGCGTTTATACGAAGAAGAAATTAGGAATAGAGGGCCTTGGCAAGTACGGGCTTTTGTTCTATAATGCGTTCATCATCATTATACCCACTATTTTGGCAAGTGCCTACACCGGAGACTTGGAAAAGGCCATCATGTTTAAAGGCTGGATGTCTCTgagttttattgtatattttatgatGTCTTGTGCCATGGGGTTTGTATTGATGTACTCCATTGTTCTGTGTAGTCATTACAACAGTGCCTTAACCACCACAGTCATTGGGGCAATTAAGAATGTTGCTGTAGCCTACATCGGGATGTTCATTGGTGGAGACTACGTCTTCTCATGGCCAAACTTTGTTGGACTGAATATATGTATCTCTGGTGGCTTGGTGTACTCATATCTGACCTTTCATGGTGGGTCTTCTGCACAAACAGCAACCCAGGAAGAGAGCAGACTGAGAGTTCATGTGGTAGAAGAAAACACAGAAGAGAAAAGCCAGTTCTCAGATATACTAACACTACAGTCTGTTAAACCTCCAATCTGAGAGTGGATCATTACAGGGTATGAAGTTACTATCAGGGATTGTATTGTTTACAGTAAATGTGTAGTTTTTCCCCTGTGTAGATGAAGAATTTCTGCTCACTTATTTTGAACCAAATGCAATATTGTTAAGCTTCAGAAAATTGATATACGAATATTCGATATATGAAGGTAAAGTGTTAACTTATTAGTTTAAGTTTATTGTGTCCAATCCATGTGACCAATCTAGCAATAACAGACATTTTTATACACAGTAGCTTCATTACGGGGACGAACAgaaaagtacagtatattttactgtacattaaGGGACAGTTCCCCTGACAGAGATTATGCCTAGTCTTGGACTGTACTGTATTTCTAATGTAGATTtctactgaaaataaaatataatctagATTAGATTAGCCCTAGTTTTTGTCCAGGAACCTGACTCAAAGTGAAGTaaaattgagcaaaaaaatgCACAAGCGAAAATGGAAGGACCTTGACACTGaaacatatttaagtttttaaggTGCTATATTTGGTAATATGGTAATTAATTGGTTGTACTGATCCTAACAGAAAGATTAAGTTGCTTAattgttggtgatattattttaatcctcctgttatgttctgggtcaaattgacctgttttaagatcagtttaaagatctagtaaaaacagttaaaagtatttgttctgtatgaaacttcttctgtttgccttaattagtgtaatcaacatatagtAGGAATATGGTTCATCTCATATTCGCAaccaactaaaacaaaattgcaatgttatgtttcattgttatgtaaaactattgatttttatatgttggtcttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73597 lncRNA downstream 8365 26546072 ~ 26551536 (-) True G54592
TU73585 lncRNA downstream 239408 26314592 ~ 26320493 (-) True G54580
TU73579 lncRNA downstream 382754 26139316 ~ 26177147 (-) True G54574
TU73574 lncRNA downstream 536797 26022850 ~ 26023104 (-) True G54572
TU73505 lncRNA downstream 565228 25939702 ~ 25994673 (-) True G54524
TU73609 lncRNA upstream 3461 26573400 ~ 26576425 (-) False ccl28
TU73630 lncRNA upstream 101969 26671908 ~ 26676623 (-) True G54613
TU73640 lncRNA upstream 130657 26700596 ~ 26701882 (-) True G54623
XR_002650059.1 lncRNA upstream 156712 26726651 ~ 26734830 (-) True LOC111192648
TU73674 lncRNA upstream 179137 26749076 ~ 26749279 (-) True G54651
XM_007254053.3 mRNA downstream 30697 26095111 ~ 26529204 (-) True fbxl17
XM_022670403.1 mRNA downstream 30697 26188106 ~ 26529204 (-) False fbxl17
XM_007254052.3 mRNA downstream 593836 25780429 ~ 25966065 (-) True efna5
XM_015607074.2 mRNA downstream 938636 25612122 ~ 25621265 (-) True lrrc2
XM_022670413.1 mRNA upstream 3743 26573682 ~ 26575743 (-) False ccl28
XM_007254071.3 mRNA upstream 24401 26594340 ~ 26599322 (-) False ubox5
XM_007254070.3 mRNA upstream 24401 26594340 ~ 26599322 (-) False ubox5
XM_022670408.1 mRNA upstream 24401 26594340 ~ 26598125 (-) True ubox5
XM_007254076.3 mRNA upstream 31524 26601463 ~ 26614549 (-) True lzts3
trnak-uuu_38 other downstream 963904 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 964737 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 965570 25594259 ~ 25594331 (-) True trnak-uuu_36
trnak-uuu_35 other downstream 966984 25592845 ~ 25592917 (-) True trnak-uuu_35
trnak-uuu_34 other downstream 968396 25591433 ~ 25591505 (-) True trnak-uuu_34
TU73608 other upstream 3461 26573400 ~ 26575743 (-) True ccl28
TU73957 other upstream 596747 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 899279 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 1158772 27728711 ~ 27731079 (-) True G54947
TU74195 other upstream 1583482 28153421 ~ 28157449 (-) True G55023

Expression Profile