RNA id: TU73609


Basic Information

Item Value
RNA id TU73609
length 417
lncRNA type sense_over
GC content 0.32
exon number 2
gene id ccl28
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26573400 ~ 26576425 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaatgtaaaaAGACACACATACCCTAATCATCATCAGCATGTGTTACACATTAATCTCTGTATGTGATGATTCTCCAGGTTAACTTGTTCTTTAAGCTTTTGTaaattacacaaataaatattataaccACTGCATGCTTCATTGCAAAGGCATGTTGATTTCTGTGTTTAGGTGTGCAGGAGTCTTCAGATGTTCTTCATGTACTTAGTAAATATCAGAAAGCACTTCTATATTTGGCATTCCAGTTTTTGGTGATGAATCAACAACGGCTGTAAAATAATGGCACACCCTGAAATGCCctttttgtaaatgtatttgatGTATGTTCATATTTCCACTTAAAGTTTTCCATGTTGTGCCAagaactgtaataataataataaatggacAAATGATACACTGTGATTATCAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73597 lncRNA downstream 21864 26546072 ~ 26551536 (-) True G54592
TU73585 lncRNA downstream 252907 26314592 ~ 26320493 (-) True G54580
TU73579 lncRNA downstream 396253 26139316 ~ 26177147 (-) True G54574
TU73574 lncRNA downstream 550296 26022850 ~ 26023104 (-) True G54572
TU73505 lncRNA downstream 578727 25939702 ~ 25994673 (-) True G54524
TU73630 lncRNA upstream 95483 26671908 ~ 26676623 (-) True G54613
TU73640 lncRNA upstream 124171 26700596 ~ 26701882 (-) True G54623
XR_002650059.1 lncRNA upstream 150226 26726651 ~ 26734830 (-) True LOC111192648
TU73674 lncRNA upstream 172651 26749076 ~ 26749279 (-) True G54651
TU73665 lncRNA upstream 200141 26776566 ~ 26779698 (-) False LOC103024953
XM_007254067.3 mRNA downstream 3461 26559901 ~ 26569939 (-) False LOC103042298
XM_007254053.3 mRNA downstream 44196 26095111 ~ 26529204 (-) True fbxl17
XM_022670403.1 mRNA downstream 44196 26188106 ~ 26529204 (-) False fbxl17
XM_007254052.3 mRNA downstream 607335 25780429 ~ 25966065 (-) True efna5
XM_022670401.1 mRNA downstream 953743 25612122 ~ 25619657 (-) False lrrc2
XM_007254071.3 mRNA upstream 17915 26594340 ~ 26599322 (-) False ubox5
XM_007254070.3 mRNA upstream 17915 26594340 ~ 26599322 (-) False ubox5
XM_022670408.1 mRNA upstream 17915 26594340 ~ 26598125 (-) True ubox5
XM_007254076.3 mRNA upstream 25038 26601463 ~ 26614549 (-) True lzts3
XM_022670411.1 mRNA upstream 45232 26621657 ~ 26627863 (-) True LOC111192646
TU73603 other downstream 3469 26558406 ~ 26569931 (-) True LOC103042298
trnak-uuu_38 other downstream 977403 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 978236 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 979069 25594259 ~ 25594331 (-) True trnak-uuu_36
trnak-uuu_35 other downstream 980483 25592845 ~ 25592917 (-) True trnak-uuu_35
TU73957 other upstream 590261 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 892793 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 1152286 27728711 ~ 27731079 (-) True G54947
TU74195 other upstream 1576996 28153421 ~ 28157449 (-) True G55023
TU74384 other upstream 1841308 28417733 ~ 28423955 (-) True LOC111192657

Expression Profile