RNA id: XM_007247211.3


Basic Information

Item Value
RNA id XM_007247211.3
length 3823
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC103024953
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26761132 ~ 26779714 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGAGACAGCCTCATGTCAGAGCTTTGTGCTCAGCGTACAGCAGTCCGCCGCGTTTTCGCTCTTTGTCCTCAAGGCAACTGCACGGTCCGCCTGAATGTAACGTTAActagatatttttttcttttctttctttctttttttgtagtgGGGAGCGTTTTGAGCCATCTGTATAAAGACTGTTAGACGATACGAGGAACTGAACGATGGTGTTAGTACACGTTGGATACCTGGTTCTTCCAGTTTTCGGCTCAGTACGAAATAGAGGATCTCAGTTTAACAGGCATCAGCATAGCCATGCTACCTCTTGCCGGCATTTCCACGTAGGCCCTCAGGCCCAGATCCCTGTTGACTTCCCAATGCCCCATCCAGGACAATCTCAGACGGGGATGAACCCGCACCTCGCCCCGACGCACCAGCCAGCCGCCCCGCTCCATCCGCCCCTCAGCCACATGCCAGCACCACAGTTCCAGGACATCCAAGGCCCCCCTTTCCTACCTCAGGCTTTACACCAGCAATACCTCATCCAGCAGCAGATCCTGGAGGCACAGCACAGGAGGATCCTTCCACAGCCCAGCAGACATGCTCAAGAGAGAACGCCCCACCATCCCCAGACGCTGCGCCCACCATATGATTACGCTCCTTCCATCCACGTCCCTCCTCCGCCACCCGTCCCACAGCAGCCACGCTACCTTGCTGAAGGAACAGACTGGGATTTGAGTGTGGACCCAGGGCTCCCTCACCCACAGTACCATGTCCCTCAGCTCCCTCAGCATTATCAGCACTATTTGGCCTCTCCCAGGCTGCACCACTTTCCCAGGACAGCATCTTCAGCACAAGTGGTTGTCCATGAGATCAGAAACTACCCCTATCCCCAGTTACATCTGTTGACCCTGCAAGGCCTCAATCCCTCTCGCCACGCCACTGCTGTGAGGGAAAGCTACGAGGAGCTCTTACAGCTGGAAGACAGGCTAGGAAATGTGAACCGAGGGGCTGTGCAAACCACCATTGAGAGGTTTACATTCCCTCATAAGTACAAAAAGAGAAGGCCACTGGAGCTGAAAATAGGGATGGACGAGGATGAGCTGGACACAGACGAAAAGTGTACAATATGTCTGTCAATGCTTGAGGATGGAGAGGATGTGAGGAGATTACCCTGCATGCACCTCTTCCATCAGGCCTGTGTGGACCAGTGGCTTGCGACCAATAAGAAATGTCCAATTTGCAGGGTGGACATTGAGACACAGCTGACTCCAGACAGCTGATGTCTCCTGTAGCACTGGTTGAAGCCCTGCCCTTTCTCCCAATCCCTACTTGGGTACTTTGCCAAATGTCTGTCTCTCCATCACCTTTCACCTTTGACCTTGCCTTCTGAGCCAACCGAAGACGTGAAGCAGGTAGGATTAAAGACATACCACAACTTGAGCGAAAAGGGGAAGGAGCGGGAGGATTCCCGGTGGACGAATGTTCGGATCTGCGCGAGCGTCCAAGGCAGCTTTCAGTGGGACTTCAGTGGGCTTTAGCCGAGTCTGTCATCGAGATGGTTCCTATCAAGGTCCCTTGCATGCACCTCCTGTGTATTTAGGACAGCAAGCGCAGCTCCTGGAAGGTCTCGACCACAGATAACCTAAAGCCTTTCCTCCCTCACAATGTTTCAGTCGACAAACGGAAATTACAACCACATTACGACATTAACATCACAAAACTCCAAACCTCCAAACATTAGATGTAGTCAGTTGTGTATTTCAGAGGTGTACTGCCGTCTCTTCCACGGCCTAGGGACGTGCAGTCGATCAactcaatatataaaatattacgaATGAGCGCTACGTGGAAATGATCTGTGAATAGGGATGGTACGGTATGTTGTGTGTCGTTATGAAACCTAATGAGTTGTAGATTGGGGAGCGAAATGGATTTCAGATAAAATCCAAGCTAGAAACACATAAGGATAACCTTGTTCTCACAAGTCAAGTAATCCAACTGTATGAAATGATACTAACAAACAATCCTTAACTGTAATTATCAGAAGTGATGCTTAATGTACTTTCTGTAATCATGGTGACAGCAAGGCCAGGCTTGACTTAAGCTGTGACAGTATGTATTTGTGCTTGTGAAAAATCTCCATGCTTAGAAAAGTATCTTCAAAATGCATGTTCTGTAAGTGGCCGGGGCTTTTGATTTCTTTAAGTTTTCGGTTTCggggttgttttgtttttctttgggaACATAATGGGTAGGATGGATGGTTCGTGCATGAGAGATATCTTACTAATTCTGAAGACACTGTGTTCTCAACTTGTCACTGACGTAACAAAGAGTGAGATGTATACCTTAATGCCTGTAGGACAAGCACACATTCTAATAGCAACAGCCTACTTCTCAGTGTTTCCATTAGCAATGTAAGTGTGTGGTATCGCTTGAACGTACAGTATATGTAGAGTTACTCAGCTAAGAAAGCAGCTCTAACGTCAAATTGTGCATGAAAACCTGTTGCTGCCATTTCTGGAGGAGACGAAAAGGGAGAAAAGCCATTGTTTTATAGATACCAAACATAACTTTTCTAAGCTGTATTTTTGAGTTGATTGTTTTCATTCTTCCTGTTCTGTTTCGTTCgttcttctccttctttttcttcttcttcttcctctttcccCTTTTTCCCTACTATTGATGAATTATGCCAACCTAGCTGTGGGGCTGGTTCAGCTTCTCACCATTTCAAATAAGTAGCTGCAATGCTGGAATAATATTTATTGTTGTCTTAATGTAGCTAGctgttatttttgtaaatgCACTATATTATGAGGTTGCCTGACTTCGATGTGATTGTGAATTTTTTCTCTCGTCCCTTTGCTTATGCATTTGCACTCAGTGACCTGTCTCCTTGACCAGTGCTGAAACGTGTACACTGCGGTCCTCACAGTAAACTCcatccaaaaagaaaaagacagtaGCGTAGCCATACTTCCACCAATCAGCTCCACTTGTATCCACAGCATTAGCTGAACCCTCATCAGTCACGctttaatgtactgtatgtggctTTATGGCTCGGTAGCATTTCTGAAGACGGTTTGGCGACAATGCATTGAGACCCCATAATGCAGTGACCCACATAATGTGCTCGCTTCTGTTTTAACACCAACCTTCCCAGGTGTCCACTTTGAGCATTGTGGCGAGTTGTGCAGGAAAGAcgtggagaactttttattgtATGGAGGCCTGTTTTTATGAGATAGAAGTAGGTTTTCCTGCTTTCGGTTTCTGGCAGCTGTGTATCAGATGTTTCTCATTAAATGTTGAAAGTTTGACTTTTTATCTTGAAGttctttaaagcttttaaaacaaCGAATTGCTAATAAATGACCTTGTTATGATTTACACATGAGATATGGGATTAGTATGGGACAGTGCTCCCACTGACAGTTCTAatcagattattaatgatttttcatGGACTTTTTCAGGAATTTACATACTGCAATCCtgttacttttggcatgttagtaTATCCACTCACTATTTTGAAATTTACAAGATAAAACACTACTATTGCTTTCTTACAAACATAATTTcaacaaaaaatacaacaaactgCACTTTTAAATGCAGGGTTCAATATTATTGAAGAAAATTctcaatgaataaaatattatttcacCCTTAATGATTTTTGGAAAGTCATGTGCCCCAAAGTATGATTGAcgcaaacaataaaaatgattgTTTATTATTCTTCTATTTAACACTATACTTGTAAttgtttgtaattattattcttaacagtaaaagcacttttttccaaattttgagtttagaaga

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K17821 RNF165; E3 ubiquitin-protein ligase RNF165

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73674 lncRNA downstream 11853 26749076 ~ 26749279 (-) True G54651
XR_002650059.1 lncRNA downstream 26302 26726651 ~ 26734830 (-) True LOC111192648
TU73640 lncRNA downstream 59250 26700596 ~ 26701882 (-) True G54623
TU73630 lncRNA downstream 84509 26671908 ~ 26676623 (-) True G54613
TU73609 lncRNA downstream 184707 26573400 ~ 26576425 (-) False ccl28
TU73680 lncRNA upstream 24887 26804601 ~ 26810668 (-) True G54656
TU73739 lncRNA upstream 183221 26962935 ~ 26972993 (-) True G54699
TU73745 lncRNA upstream 193854 26973568 ~ 26974092 (-) True G54702
TU73763 lncRNA upstream 279023 27058737 ~ 27060451 (-) True G54716
TU73949 lncRNA upstream 367701 27147415 ~ 27505872 (-) True G54846
XM_007254072.3 mRNA downstream 107546 26648539 ~ 26653586 (-) True LOC103043649
XM_007254073.3 mRNA downstream 117764 26640501 ~ 26643368 (-) True LOC103043953
XM_022670411.1 mRNA downstream 133269 26621657 ~ 26627863 (-) True LOC111192646
XM_007254076.3 mRNA downstream 146583 26601463 ~ 26614549 (-) True lzts3
XM_022670408.1 mRNA downstream 163007 26594340 ~ 26598125 (-) True ubox5
XM_007247208.3 mRNA upstream 104929 26884643 ~ 26920418 (-) True LOC103024013
XM_007247203.3 mRNA upstream 239418 27019132 ~ 27023268 (-) True LOC103022658
XM_022670410.1 mRNA upstream 244908 27024622 ~ 27028494 (-) True LOC103022143
XM_022670409.1 mRNA upstream 244908 27024622 ~ 27028491 (-) False LOC103022143
XM_007247200.3 mRNA upstream 250202 27029916 ~ 27034974 (-) True tmem127
TU73608 other downstream 185389 26573400 ~ 26575743 (-) True ccl28
TU73603 other downstream 191201 26558406 ~ 26569931 (-) True LOC103042298
trnak-uuu_38 other downstream 1165135 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 1165968 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 1166801 25594259 ~ 25594331 (-) True trnak-uuu_36
TU73957 other upstream 386972 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 689504 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 948997 27728711 ~ 27731079 (-) True G54947
TU74195 other upstream 1373707 28153421 ~ 28157449 (-) True G55023
TU74384 other upstream 1638019 28417733 ~ 28423955 (-) True LOC111192657

Expression Profile