RNA id: TU74086


Basic Information

Item Value
RNA id TU74086
length 2369
RNA type TUCP
GC content 0.43
exon number 1
gene id G54947
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27728711 ~ 27731079 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCTTATCAAACAGAAAACCAAACACTGTAATGAAGAAGCCctgagacaaaaataaaaaagacagataCAGTTAAACAGAGGTCTCAGTGCAGAAATATCAAGattatttttcagtttattaGATTTGCATACAGGGTTTAGAGggttactttaaaaaacaacTGTGGTTCatttatgccaggttcacatgACACGGTTTAAGCAGACAGTTTTTAGGTTTGCTGCAGTTTTTTGCTAAttggacacaaaaaaaaacccaaaaaacaaaataaattagggATCTCTTGGTGCTCGTGCATCTTGTGGTGTGTAATACTGAAAGACGCTCACCGAGCTGCGGCTGAGCGATCGCCAACCAGTCACAGGTGCCCAGTAAATATCTGGCATGCtaaatatctgactcagtcagtGACCTGGGATTCAAGAGCAGTAAAGGTACTCGCACACTGCAGGCAGTAGCTGAGCCGCTGTACGCTGACCCCCATTGGATTGAATTGCTTCTCCTGCAGCAAAAAAAGTTTGCCACTGCCATGGAGCAGCGGTGCAAAGTGGTGCATTTCCACGTACATAACCACGCCTACACAGTGCTGCCGCTCATCCCAGTCAAAGTTCAACCTGGTTCGACTTTGACGGCAAGCTGTACTGCCACAAAAAACGCAGAGTGAACACACTCAGCTGTAGATCACTTCCCtacactcatatagagataCTAGGAGGAAGACCAGAATCAGCGCTTCattctgattttaaaatgtttaattataaagcaaatatataatatttgtggtcataaaaaatacagcaatgTATTACTAAGGTTTTCTGTGTAAAGCTCTTTATAGCTCTTTATAAATCCCTATTATCTACCACTACTAGTAGATTTTCCATTGAACGGGAAAATAAGATTAtcccctgtctgggaaactgcccaaTAGTGCATAATGTTATTTGTAAGGTATGTAAGATTATTTACCTGTAGAGAGTTTAGGATGGCAAACAAGTAATGCAGCTCTACAGTTCCAGGACTGGTTATGGTGCCCAGGCCAAACCCCCAGGTGAGGCCTAAAATGGGGGTTAAGACAGCCACAAATCGAGCGATGACAGCCATACTGTTCTTCTCATCTGAGGTTCTTTCTCCCActctttttttcaacattttatacAGGACCACTATCATGACCACAAAGTTGGTGAAGACTATGGCCAGGACTGGAAAAGCGAAGGCCAGCAGAGCTCTAGAATCATCCCACTGCAACCAGCATGCATCCTTCCTGATATACTTTCCCCTTCCTGCTGTTGATGCCACAGTAATGACGGCAATGATGAGCGGAGCTCCATAGCCCACGCTAAAGGAAATTGCCATCAAGGAAGTCTTGGACATGTTTGTGAAGACCACAATGACGCTGTACAGCAACAGGATAGCAGACACCAGCATCCAGAAGAAAACGGCCAGGTAAAAGAAGTGGATGAAGAAGATCACTGCATGGCAGGCAGGGTTTGTCTCCAGCTTATCGGTCACTCCAGCAATGAGCCAGATATCTGCGATCAGAAGGGACAAGGCGATGTTGACCATTGAGACGTGTCGCAGGTATAGCATTGGACTATTGGTCTGGGAGCTGGTGAGGGGCTTCCAGAAGATGATCTCTATGAGGAGGAACACCACCAAGCTCAGCACTGACACACTAAGACCGACGTAGGTGATTATGGTCAGGGAAAGACTGTCCTCGTTTAAAGGAGACATCAAGATGGAAAATGACGTGGTGTGATTGCATTCACACATCAcgtttcctggaaaatcttccGTCAGCTTACACCCATATGAGTCCCAACCACCTATATTATTATAAAGACTAAagttccagaaaacacactctgGATTTGCCagtgtttttgagtttttttgagTAAGGAGTTTTTTGAACTTGAAAGTGACGTCGCTTTCGTTCTGACTGGGGGAGACCATAACAATGATTCCACTAATGGTGTTCACTGTGGTGTCATTTACACTTGTATTTCTTGATGGCAGAATGTTACTCAGTGAGAAAAACGCTAAGGCAGTGATTGTAAGGTTTTTAGTGAGATTGGTGCTGGGGATGAATAGCGAAGCCTCTGAATGGTTCCCAAATGTTTCATTGAAAGGCTGATCGATGATGGTAGCCTTGGTGAATGTGATGGTGTTGGTGCTGGTTGCAAATTAGAGATATTATCTGAAGtaatttttaacaatattttccAAAGAAAGCAGTAGTAAAGAACTGTTTCCTTGGCTGACAGGTTGAGAATTTAAGGCTTcccatgttttatttgtttcagcAGATGAAATGACCTCCACTGTTTCTAGAAAAttctgaaaggaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74047 lncRNA downstream 8133 27719653 ~ 27720578 (-) True G54920
TU74040 lncRNA downstream 13790 27712472 ~ 27714921 (-) False G54916
TU74039 lncRNA downstream 13790 27714045 ~ 27714921 (-) True G54916
XR_002650061.1 lncRNA downstream 64843 27662326 ~ 27663868 (-) True LOC111192650
TU73949 lncRNA downstream 222839 27147415 ~ 27505872 (-) True G54846
TU74095 lncRNA upstream 31549 27762628 ~ 27767606 (-) True G54954
TU74116 lncRNA upstream 206043 27937122 ~ 27938370 (-) True G54965
XR_002650064.1 lncRNA upstream 268551 27999630 ~ 28008669 (-) True LOC111192655
TU74182 lncRNA upstream 295660 28026739 ~ 28028474 (-) False LOC103039900
TU74202 lncRNA upstream 432734 28163813 ~ 28165094 (-) True G55029
XM_022670437.1 mRNA downstream 69406 27604871 ~ 27659305 (-) True LOC103030338
XM_022670436.1 mRNA downstream 139747 27507703 ~ 27588964 (-) False LOC103030651
XM_022670429.1 mRNA downstream 139747 27507703 ~ 27588964 (-) False LOC103030651
XM_022670427.1 mRNA downstream 139748 27507703 ~ 27588963 (-) False LOC103030651
XM_022670432.1 mRNA downstream 139748 27507703 ~ 27588963 (-) False LOC103030651
XM_022670440.1 mRNA upstream 660 27731739 ~ 27755834 (-) True epgn
XM_007247179.3 mRNA upstream 3765 27734844 ~ 27753958 (-) False LOC103042060
XM_007247178.3 mRNA upstream 6169 27737248 ~ 27753958 (-) True LOC103042060
XM_015605282.2 mRNA upstream 261383 27992462 ~ 27996332 (-) True LOC103029383
XM_007247170.3 mRNA upstream 295660 28026739 ~ 28043251 (-) True LOC103039900
TU73985 other downstream 255364 27469218 ~ 27473347 (-) True G54873
TU73957 other downstream 560201 27166686 ~ 27168510 (-) True G54854
TU73608 other downstream 1152968 26573400 ~ 26575743 (-) True ccl28
TU73603 other downstream 1158780 26558406 ~ 26569931 (-) True LOC103042298
trnak-uuu_38 other downstream 2132714 25595925 ~ 25595997 (-) True trnak-uuu_38
TU74195 other upstream 422342 28153421 ~ 28157449 (-) True G55023
TU74384 other upstream 686654 28417733 ~ 28423955 (-) True LOC111192657
TU74381 other upstream 867199 28598278 ~ 28600510 (-) False LOC103031600
TU75652 other upstream 5050197 32781276 ~ 32802153 (-) False LOC103021360
XR_002650076.1 other upstream 5417995 33149074 ~ 33177650 (-) False LOC103023237

Expression Profile