RNA id: TU74195


Basic Information

Item Value
RNA id TU74195
length 1787
RNA type TUCP
GC content 0.47
exon number 6
gene id G55023
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28153421 ~ 28157449 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATATCAAAGTTCATATCTGGGAACATTACAGCTGGTCAAAGGGGAAAAGATGcaacattaataattaatgtgaGCAAAAGAGATGCAGTTTACAAATAtggtattaaaaagaaaaagatctaTACTCAAACATGGCTGTGAATACGGATCTGTACACCCCGCCCTAAAACACTTCTCAGAACATGTAGAaatgcaatttaaaataaattaaactaaaataaataaaaggtgtTTTCCAGAACtggaatattgttttttttttttttaacaaatagttttatttatatcttacaTCAGAATGGTTAATCCGCTGTCAGAATGCTTGTCCAGGTAACGGGCTGGAAGATAAGTGCTTCTTAATGACTTTACTGTTTTGTAGTTGAACTAGAACTGTGGGAACAGCTGAGCTTTGTGTTTACTGTAGGATGCTGAGGATCTCTTTAGCGTTTTCTGTGTTCCAGCCTTGGCCCTGCAGCGGACCCTCACATGCCAGAACGTACTTATTCAGGATCTGAGCGCCAATATCGCGGAACTGAAGCCGGTCTTCCTTCTGCTCCGCACCATCAGCACTGCTGTCCTCGTACTTTACCGCCCAGAAACACATCTCCCCTATGTACATCATTGTCAGCAAGTGTGTGTCTGAGATACCTTCTGACAGGAAGTTTGCAGTTGTGGAATCATGGAAAACAACACCATCATTCAGTTTCACAGAGCTCCGCACCTGCAGCATCTTCATCAGGTACCGCACGCCTTCTTGAACACACTTTAGGAATGTGGCTTTATTCTGTTTGATCCACTGCTTTCTCTGATGTAGCGTGTGACAGTACATGTACAGCAGAGCTCCCCGGCGCCAGTACAGACACTCCAACAGCTCCAAACCCAACACACACTGCACCTCTTGGTTTGGTGCCAGCCTTCCTGCTAAAACCTCAGGCTCGGTCAGGTCCTGCAGTAGCTGCTGGATTTTAAAGGGGGATGTGTCCTCTGGAAACTCCTGATCAACAAGCCTGTTCTCCTCATAGAATGTGATGTCCAGGATAACCTGAGTGTAATCCTGAAGCAGCTTTGCCACACTGCTGCTCTCTCCCGCCTGTGTGTTATAGTTCCTCAGCTTCTCCAGTATGGAAGAGGCGTTCTGTAGATAGTCATCATCTTGCCTGTTATGTTAACTAACAAACTagatatttatacacacacctgGCTATTCcctgctagctagcttagctatttTCAGACTGTTCTTCTAGATACAGTCTAAAGGAATTTTAACGATTAAACGGAAGGACTGTTTTACTCCGTGtaaaaacacacttacacagtttACTAGTTAAACTAGCTAATAAATGAACCTGTTAGCAGTCCGCTGTTCACCGCCTCAGAACAGAGGGCCGCTTTactcactgtaaacacacagttACCAcagctagcctagcctagctccagttagcctagcctagcctagcctccCTCCGTAAATACAGCGCTGTGTTGCTAAGCTAACCCGCAGCCCCTGCTCCGAGCGGCTCTAACCCAGCACTTCTCAGCTCCGACAGCCCCAAACCCCGCCGGGACCGAGCCCGGACCCTCCGGGCGTGTCCTCCCCGCTTCTGTACCGTGTGTCTCCGCCCGCAGCGCGGCGCACCTGTCCGACAGGTGACTGATCCTGTTCTCCAGCACGCGCAGCTCCGCCATCGCCGCACGCGCGCTCACGTGACCGTCACGTGGTCAGGGGGTTTAAACAGCTGCTCACGTGTCACTGTAACGCATTTGTGCTTTTTACCATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74182 lncRNA downstream 124947 28026739 ~ 28028474 (-) False LOC103039900
XR_002650064.1 lncRNA downstream 144752 27999630 ~ 28008669 (-) True LOC111192655
TU74116 lncRNA downstream 215051 27937122 ~ 27938370 (-) True G54965
TU74095 lncRNA downstream 385815 27762628 ~ 27767606 (-) True G54954
TU74047 lncRNA downstream 432843 27719653 ~ 27720578 (-) True G54920
TU74202 lncRNA upstream 6364 28163813 ~ 28165094 (-) True G55029
TU74203 lncRNA upstream 11204 28168653 ~ 28169114 (-) True G55030
TU74263 lncRNA upstream 96871 28254320 ~ 28254981 (-) True G55079
TU74265 lncRNA upstream 104626 28262075 ~ 28262656 (-) True G55081
TU74269 lncRNA upstream 153956 28311405 ~ 28313529 (-) True G55085
XM_007247169.3 mRNA downstream 3049 28085737 ~ 28150372 (-) True LOC103039388
XM_007247168.2 mRNA downstream 69501 28051815 ~ 28083920 (-) True plcxd3
XM_007247170.3 mRNA downstream 110170 28026739 ~ 28043251 (-) True LOC103039900
XM_015605282.2 mRNA downstream 157089 27992462 ~ 27996332 (-) True LOC103029383
XM_022670440.1 mRNA downstream 397587 27731739 ~ 27755834 (-) True epgn
XM_022670447.1 mRNA upstream 103048 28260497 ~ 28262000 (-) True selenop
XM_022670450.1 mRNA upstream 261981 28419430 ~ 28423939 (-) False LOC111192657
XM_007247160.3 mRNA upstream 288136 28445585 ~ 28451464 (-) True orai1
XM_007247155.3 mRNA upstream 323963 28481412 ~ 28492730 (-) True LOC103034781
XM_022670455.1 mRNA upstream 349689 28507138 ~ 28516635 (-) False LOC103033816
TU74086 other downstream 422342 27728711 ~ 27731079 (-) True G54947
TU73985 other downstream 680074 27469218 ~ 27473347 (-) True G54873
TU73957 other downstream 984911 27166686 ~ 27168510 (-) True G54854
TU73608 other downstream 1577678 26573400 ~ 26575743 (-) True ccl28
TU73603 other downstream 1583490 26558406 ~ 26569931 (-) True LOC103042298
TU74384 other upstream 260284 28417733 ~ 28423955 (-) True LOC111192657
TU74381 other upstream 440829 28598278 ~ 28600510 (-) False LOC103031600
TU75652 other upstream 4623827 32781276 ~ 32802153 (-) False LOC103021360
XR_002650076.1 other upstream 4991625 33149074 ~ 33177650 (-) False LOC103023237
trnaa-agc_13 other upstream 5202920 33360369 ~ 33360441 (-) True trnaa-agc_13

Expression Profile