RNA id: XM_007230970.3


Basic Information

Item Value
RNA id XM_007230970.3
length 3197
RNA type mRNA
GC content 0.56
exon number 2
gene id LOC103042909
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20611971 ~ 20630285 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCACCGAGGCCTTTCCCTATCCGTATCCGCTATCGGAAGCCTAAATCCGGGCACTGCGAGTGACTGGAGTCCCCTGATGTCACTCAGGAGCCGCCTGCcttccctcctcctccttctcctccctcCTCCCGGTCTCTCCCCCCCCGCTCCTGCCTCTCTTCCCCGCTGCACTCGGCGACCGTGTCGGCCGCCAGGAGAAGGGCCGCGGGAAGAAGGGAATGggactgttttagtgtttttattcctCGTTTATTCAGAAAAGACTCGCGGAATGCGGACGGCGGGATGGAGGCGCCTCTCCGTACCGAGCTCGCTCCGCTGAGGCGGGCCGTGTCTGCCTGCACCGCTAGCCGCCGCCTGCTCTCCTCACCACGGCAACATGGACCCCGCTTCTCCTGATCGCCTTTACGTCGCTAACAAAAGGAAACCTTCGAGAAAATAGCGCGAGAGCTCCGCGGAAAGATTGGTACAGGTGGCCCCACCACATGGAGAAGGTAGGCAAGGTGTGGAGCAACCTGAAGAGGGGATGTCAGTCTCTGCTCCACCCAGATGGAGGTTCCCGTGGGGAACAAGTTCAACAGCAGACTCAGCAAGATACATTTTGCCAGAGTGTGGACCAGCCCGAGCGAGAGGCCCAGCCACCACAATCACCAGCCAGCCCTTCCTCTCGCAGCCGGTCAGCTCTCCCTCTGGTCTCCCGGAGGGTCAATGGGAGCGCTGGAAGGCGGCACCATAACTGTGTGGCTGATGTTCCTCAGATATTGGAGATAACAGTAGAGCAGGACACAGAGGATGGACGTGTCCCTCTGGGTACCCGCAGAGACTCTTATTCGCGTCACGCTCCCTGGAGTGGCAAGAAGAGGCACTCGTGCTCCACCAAGGCACAAAGCTCCTTGGAGACAACCGAACGACGCAGTGGCCGTTCTCGCCGTAGGCATGGAACAAGCGGCATTAGCAGGGAAGAGCTTGAACCAGGAGCGCCGCGCTCCCTGCGCCAGCAGTTCCATGACACTATGGGCCTGTGCCTACCTCTCCGCTCTTCGTCGCGCAATGCCCAGGTTCGACCACCTAAACGCAAGATACAGATCACCGAGCTCATGCTGGAGACGTGCCCCTTCCCACCTGGCTCAGACCTTGCCCGCAAATGGCACCTTATCAAACAACATACAACGCCTGTTGCCTCCACAGCAGTGGACTGTTCTACAGAAGGTCCTGATGCCGCTCGTGGATCTCCGGAGGATGAGGAAGAGCGCCTGCGCGAGCGACGAAGACTCAGTATAGAAGAGGGCGTGGACCCACCACCTGATGCCCAGATTCACACAGTAGAGGCCATTACAGCTCCCCTGGCCTCCATCTACAAGCTAGGACCTAAACTGGCCCCCGGGATGGGGGAGACCGTCGGCGAGAGCCGGGGAGCCGCGGCGGCTGACTGTGACTCCGAAGACGATGACTCCACCACCCTTTGCTTGCAGGCTCGTCGACCCAAGCAGCGGCACGTCTCAACGGAGAGCCACTTGGGCAGTAAGCAAGCAGGGCTGTGGAAGGTGCACACACAGATCGACTACATCCACTGCCTGGTGCCTGACCTGCTGCAGATCACAGCACTGCCGTGCTACTGGGGGGTGATGGACCGCTACGAGGCCGAGGCGCTGCTGGACGGCCGGCCTGAGGGCACCTTCCTACTGCGCGATTCGGCGCAAGAAGACTACCTGTTTTCTGTAAGCTTCCGTCGCTACGGCCGCTCACTACACGCGCGCATCGAGCAGTGGAATCACAACTTCAGCTTCGACGCCCACGACCCCTGCGTGTTCCACGCGGCCACGGTGACGGCGTTGTTGGAGCACTACAAAGACCCCAGTGCCTGCATGTTCTTCGAGCCCCTGCTCACCTCGCCTCTTCACCGGACCTTTCCATTCGGACTGCAGAGCCTGGCCAGGGCCACCATCTGCCGCGGGACCACCTACGACGGCATTGCGGCGCTGCCTCTGCCGCAGGCACTGCAAGACTATCTCAGGGAGTATCACTACAAGCAGAGGGTGCGAGTGCGCTGGCTGGAGCGAGAGCCGCTCAAGGCTAAGTGAGATGAAGCTGACCTTGAGCTCGACTCGGCTCGGCTCCTGCTAGACTAATCAAGGTGTGGGAAGGGGGTTACACTGTGTACCGAGCAGCAGCAGGGGTTAAGGGGCTCTCCCAGAAGAGTGAGTAGTCCGTTCAGCACTTTGCAGAGTTGGGGGGATTCTATTGTGTATTGAGTTTTTTATTGCGGGAAAAGGCTTGAAAGGGGTGAAAAGGTGCATACGTGGGGCGAGGGAGCAAAAGGGGCCTGAATCCGaacacaatataataataataagcttttgtcgttttattctttttgtttatttctttgtttattaacCAACACCAACAATTACATATAGCTATAGGTTATAGAGCTGAAGTGGCTCTCCGGTAGACAAATCACTCTTCATCTTCTCTTCATCGGCTTCTTTCTGGACTTGACTTAAGTAGACTGAAGGAGTTGTTGGGGGGAGCCTGGCTTTAGGTTTAATTCGCCCACCTCCAGGCTCTTTTGGGGTGGAGGGGGTTCTCATTGCTAGACTGGGTACATGGTTTTACTCCCCCCTTCCCCCTCTTCTTCTTCCCACTGGTTggttcacacactttcacacactaaTGTACAGTACAATTGTGCAGCCGTTAATCGTCAGCCGTCACCTTCCTACTTTCTTCAGGATGCATTGCAAAAAATgcttttgttgtcttttttctAAGGTCATATCGTAGGGTGTTGGGAGGGGCTGAGCTGTGATCAAGCTGTTACGTTCGTTTACCCATAATCCTTTGCTTTCAAGGTGCTCTGTCAGTGTTTCCCCAAGATGTAGCAGGTGTTGAAGCAGGCTTGAAGAGCCGGAAACAGAAAGGGGGATTGACCCTGTTCACAGAGAAcaacacaaagaaagaaagaaagagagagaaagagatggagagatccatgaaatgtgcattttattttagtactATGTGTCCAGACAGCCATTGGAAGACCCCTGTAGGAaggcccccattgtctgcagaagGGCTCTGTGacattctgcttctttttcacTTCCAGGAAGTGACAAAAATGGACGGTGATGCATAATGTGGCTACAGTGTTGATTTGTGTCATGTGATGCGAGTGCACCTGGTTTTCG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04698 SOCS5; suppressor of cytokine signaling 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72172 lncRNA upstream 48730 20562311 ~ 20563241 (+) True G53531
TU72166 lncRNA upstream 51137 20557982 ~ 20560834 (+) True cript
TU72062 lncRNA upstream 148086 20344023 ~ 20463885 (+) False LOC103044634
TU72056 lncRNA upstream 251811 20341999 ~ 20360160 (+) False G53431
TU72055 lncRNA upstream 259050 20341999 ~ 20352921 (+) True G53431
TU72233 lncRNA downstream 125437 20755722 ~ 20755941 (+) True G53572
TU72251 lncRNA downstream 176624 20806909 ~ 20825661 (+) False fbxo11
TU72254 lncRNA downstream 210582 20840867 ~ 20841695 (+) True G53586
TU72245 lncRNA downstream 239004 20869289 ~ 20874487 (+) False G53578
TU72243 lncRNA downstream 241447 20871732 ~ 20874487 (+) True G53578
XM_022670898.1 mRNA upstream 51023 20555314 ~ 20560948 (+) False cript
XM_022670342.1 mRNA upstream 68434 20493169 ~ 20543537 (+) True rhoq
XM_022670341.1 mRNA upstream 187844 20419160 ~ 20424127 (+) False LOC103044634
XM_007230979.3 mRNA upstream 204209 20394713 ~ 20407762 (+) True LOC103045569
XM_007230980.2 mRNA upstream 300081 20304705 ~ 20311890 (+) True LOC103045864
XM_007230969.3 mRNA downstream 51521 20681806 ~ 20690420 (+) True calm2
XM_022670953.1 mRNA downstream 138120 20768405 ~ 20774298 (+) True LOC103041876
XM_007230968.3 mRNA downstream 138122 20768407 ~ 20774294 (+) False LOC103041876
XM_022670344.1 mRNA downstream 145309 20775594 ~ 20791183 (+) True msh2
XM_007250106.3 mRNA downstream 163740 20794025 ~ 20825674 (+) False fbxo11
TU72167 other upstream 51137 20557884 ~ 20560834 (+) False cript
TU72061 other upstream 184768 20419221 ~ 20427203 (+) True LOC103044634
TU72063 other upstream 184768 20419221 ~ 20427203 (+) False LOC103044634
TU72064 other upstream 184768 20419221 ~ 20427203 (+) False LOC103044634
TU72045 other upstream 322962 20243150 ~ 20289009 (+) True G53426
XR_454832.3 other downstream 163740 20794025 ~ 20825674 (+) False fbxo11
TU72536 other downstream 1288940 21919225 ~ 21921594 (+) True G53804
TU73348 other downstream 4915707 25545992 ~ 25549470 (+) False srp19
trnaw-cca_1 other downstream 4934376 25564661 ~ 25564732 (+) True trnaw-cca_1
trnaw-cca_2 other downstream 4934957 25565242 ~ 25565313 (+) True trnaw-cca_2

Expression Profile