RNA id: XM_007235648.3


Basic Information

Item Value
RNA id XM_007235648.3
length 2431
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC103035481
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20042497 ~ 20089372 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCCTTCATCAAGACTCTGACCCGAAGAAGATCTTGGCCTCTGTGTGGAAGAAATTTATCTGTATTTTAGGATCTGTAGAAGCGGATTTTTCGGACTATGGTTCTGTTTTGACAGTGGGCTGTCACTCCGTTATTGTGCTGCTGGTGAGAGAGTTCGGGGGGTTGATTCGGCTTTAAAAATGCCCAAGAATTCGCGCTATCTGAGCAGTGAAAGCCCGAGATCGGAATTATCGGCTCTGATGTGAAGTCCTATCTCTccgttttgtttgtttgttttttttaagaagggAAATCATTAGAAGATAAGCAGCTTCTGGGGAAAATAAACAGCGAAAAGACACAGAAGTTGGAACTGAGCAGCTCTGACATTCGTGGTATATCTTAAAAAGACGGTGTCCTGAGACATGGGGGCGTTTCTGGACAAACCGAAGACAGAGAAGCACAATGCCCACGGTGCAGGAAACGGCCTGCGCTTCGGCCTCAGCAGCATGCAGGGTTGGCGGGTGGAGATGGAGGACGCACACACAGCCGTGGTAGGGCTTCCTCACGGCCTGGACGACTGGTCCTTTTTCGCCGTGTACGACGGCCACGCCGGCTCCCGGGTCGCCAACTACTGTTCTAAACACCTGCTAGAGCACATCATCACCAACAGCGAGGACTTCCAGCCCGGTCCCGACTCCGTAGAGGGCGTAAAAAGTGGCATCCGCTCAGGCTTCCTGAAGATCGACGAGTACATGCGCAACTTCTCAGACCTGCGGAACGGCATGGACCGCAGTGGCTCCACGGCAGTCGGCGTGCTGCTGTCGCCGGAACACCTCTACTTCATCAACTGCGGGGACTCCCGGGCCGTGCTGAGCCGGGCCGCACAGGTGCGCTTCTCCACGCAGGACCACAAGCCCTGTAACCCACGCGAGAAGGAACGAATCCAGAACGCTGGAGGCTCGGTAATGATCCAGAGGGTAAACGGATCCCTCGCCGTGTCGCGCGCCCTGGGCGACTACGACTACAAGTGCGTGGATGGAAAGGGACCCACAGAGCAGCTGGTGTCGCCCGAGCCGGAGGTATACGAGATCCCCAGAGTTCCAGATGAAGACGAGTTTGTGGTTCTGGCCTGCGACGGGATCTGGGACGTGATGAGCAACGAGGAGCTGTGCGAGTTCGTGCGCTCTCGGCTTGAGGTGTGGGAGGACCTAGAGAAAGTCTGCAACTCTGTGGTGGACACGTGTCTACACAAGGGCAGTCGCGATAACATGagtgttgtgttggtgtgtttccCAAATGCACCCAAAGTATCAGAGGAAGCAGTAAAGAAAGAGGCAGAGTTGGACAAGTTCATAGAGTCTCGTGTTGAAGAGATCATGGAGAAGTCCGGGGAGGAAGGTATCCCCGACCTGGCCTACATCATGCGTACTCTCTCCGCTGAGAGCATCTCAAATTTACCGCCAGGAGGTGGCCTCGCCAGCAAGCGCAGCGTTGTGGAGGCAGTGTACAACAGGCTTAATCCACATAGAGAAGAAGATGGGGACGACCAGGGAGGCGCGGCCGCCGCGggcgaagaagaagaaggcagTGCCGCCGCCCATCTGCTGGAGGCGCTGCGCCAATTCCGCCTCAGCAACCGGGGCGAGTATCGCCACGTGCTGGAGCAAGCGCTGTCCGGCTACCGGCTGTCCTGTGAGCCAGGCGGCGCCCCGCGACCGAACCCTCAAGAGGAACCCGCCTCGCCCCCGCCGTCCCCTGCCACCGAGCCCCTCAACTCTGAGGAGGGCGCCAACGAGGCGGCCACGCCGCCGCCAATCGACGAGCTCTCTGATCCCCCTGTTGCATGACCTTTGCCCTCTTTAGTAACCGCCATACCTTTAAACCCTTCTATTTATCCTGCTCACCAGCTTTCCTCTCTTCTCCCCCCCTCCCTCGCTCACAGCACTAGTCAGCTCCCTGAATGTGGCACGGCTCCCTCCCAACACAGTTAACAGTTACGGTGCaggtttatattaaatattatatatgaccactttcttgtttctacatttattgtcctttttttttttttttgctgcactgAGCATATAGGACTCTTTGTAgatctataattacagactgtagtcgtGTATCAGAGTGGAtctgatacagcagtgctgctggagttttttaaacacctcagtgtcgcTGCTGTACTGAGAATAGTCtaccaacagcatcctgtgggatAAAAGACTAGagtatagggctgcaactaatgattgaTTGTTctggtagtcaactaatctggtGATTATTTTtgcgattagtcaacgattatctCTGTCATGTCTTTTGCCTCTGCTTGCTATGGGTACTGCAACTGCAACAAtataaacagctgaacatgagatttaaatgccatttaaatgtgCAGAACAAGTGctgattagggctgcaactaatgat

Function

GO:

id name namespace
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04461 PPM1B, PP2CB; protein phosphatase 1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72087 lncRNA downstream 8352 20037119 ~ 20041892 (-) True G53456
TU72090 lncRNA downstream 14753 20034766 ~ 20035491 (-) True G53458
TU72089 lncRNA downstream 15612 20033363 ~ 20034632 (-) True G53457
TU72099 lncRNA downstream 17156 20032854 ~ 20033088 (-) True G53467
TU72094 lncRNA downstream 42082 20007947 ~ 20008162 (-) True G53462
TU72103 lncRNA upstream 1506 20090878 ~ 20100795 (-) True G53470
TU72106 lncRNA upstream 14534 20103906 ~ 20112140 (-) True G53473
TU72139 lncRNA upstream 223756 20313128 ~ 20314046 (-) True G53502
TU72137 lncRNA upstream 224922 20314294 ~ 20315583 (-) True G53500
TU72136 lncRNA upstream 253023 20342395 ~ 20352851 (-) True G53499
XM_007235647.3 mRNA downstream 144171 19902293 ~ 19906073 (-) True LOC103035166
XM_022670334.1 mRNA downstream 210662 19682391 ~ 19839582 (-) True LOC103034301
XM_022670333.1 mRNA downstream 379574 19605555 ~ 19670670 (-) True LOC103036701
XM_022670332.1 mRNA downstream 479866 19522702 ~ 19570378 (-) True LOC103025665
XM_007239985.3 mRNA downstream 590869 19437633 ~ 19459375 (-) True LOC103025356
XM_022670338.1 mRNA upstream 226644 20316016 ~ 20392201 (-) False LOC103047709
XM_022670337.1 mRNA upstream 226644 20316016 ~ 20392201 (-) True LOC103047709
XM_022670339.1 mRNA upstream 227841 20317213 ~ 20392206 (-) False LOC103047709
XM_022670340.1 mRNA upstream 253538 20342910 ~ 20392195 (-) False LOC103047709
XM_007230972.3 mRNA upstream 452492 20541864 ~ 20556330 (-) True pigf
TU71983 other downstream 199894 19849950 ~ 19850350 (-) True G53382
TU71687 other downstream 1382957 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 3460461 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 3460461 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 3622631 16406719 ~ 16427613 (-) False zcchc4
trnai-uau_7 other upstream 213163 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 592439 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 694366 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 728467 20817839 ~ 20819409 (-) True G53607
XR_002650112.1 other upstream 2757304 22846676 ~ 22847337 (-) True LOC111192727

Expression Profile