RNA id: XM_007239985.3


Basic Information

Item Value
RNA id XM_007239985.3
length 3672
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC103025356
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19437633 ~ 19459375 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaatagatagatagagaaagagggagagggagggagagagagagagagagagagagagggagtgggcACAGAGAGGGTGTGGATACGTTAAGTTTTGGTGAGAATGTTCAGAAAGAAGTGggtgaagagagaaagagaaagatagagggaaggaaagagaggggaaagagacagaaagagagagagagagagaaggaaagatagcgtgagaaacagaaagatagagagagaaggaaagataGCGTGAGAAACAGAAGTAAGTTTTAAGGTTAGTAGATTTTGGAGTTTCCAGAAGTAGCCAAAGCTGGACTTGAACCGAGGACCCCTCCACTGCCGGTGTTGGTATCTACCCTGGGCAGCAGCAGAATGGTCCTAAAGCTGCTAGTGGCCATGCTGCTTCACCCAGCACTCTGCCATGCTGGGCTGAGGGCCAGGGACCCTGATGTGGAGGAGGAGATGCATGTGCTGAGGGACTCGGAGCCAGGCACATTTGGTACAGCTCATTTGCCCGTACCTCATGGGCATCAGCATGGGCATGGGCACCACAGCACAGCTGGACCACTGCAGCAAGCCCAGAGCATTCCACAGAGTCCACTGACCCCAATGAGGGGCAGTTCACAACCGCCTGCACGGACTGGGAACTGGTGTGCGGTGGTTCACCGGCGGGTGGTGACGATGGCAGTGCTGTGTGGAACTGAGACGTACACTCAGAAGACGGTCAACCCATGTAGTAAAGGTGACCCTGACTGCCAGATATACAAGTATCAGCTCTCATCACGCCCGGTCTACAGACAGAAGCAGAGGATTTTCACAGCCCTGCACTGGAAGTGCTGCCCAGGTCATGGAGGCCACAACTGTGAAGATACAGAAGAAGAAACTCAGTCCAGTAAGGAGCACACCCAGAACACCCAGAACGACAACCATTCTGGAGAGGACGACTCAGGTGGTGAAGAGACTGACCTGCTGGAGGATGGAAGCTGGGATAATGGTCCAGTTCAGCCGCCTCCCAGCGTCCCACTGTTTCCTGTTCCAGGGAACGTTGGTTCTGGTGGAACAATCCCTCCCACTGGTTCTCTGACGTTCATGGACTCGGTCACTCTCTTGACGGTCCATAAAGTGTTTGCAGCTGTGATGACCCACCTTCAGCCAGTGCTGGACGGCTTTAATCACACTCTGCAGCATCTGTCCAGCGAGGTCAAGGATCTGTCCATGGatctgcagaagctgaagcaTGAGAAGAAAGAGCATCTATTCAACAATAGACAGACTCACACTGGAACAATAGAGGAAAAGCTGGAGGACAACAGCCTTCAGATACGCCAGATACAGTCCCAACTCCACTTACAGCAAAAACAGGTAGAGGAGACAATAGAGTTCCAGCAACAGCAGCTACAGCAGAACCTGATGAGCCTAGAGGACAATATTGACCTTCGAATGAACCGGAGTCATGAGGGTCTACAGGTGAGTCTGCAGTCTCTATGTCAGTCAGTGGAGGAGATCAGACGTAGTCAGCAAAATCTGGAGGAAGTAATGGAGGCAGAATATGCTCCCTCGGCTCGTGTGAGTGAAGGCCCGCCAGCACCGGTGTCTGGCATGTGGGAGGCCATCAGTAGATTGGACCAGAAAGTGCTGAATAACACTGCACAGCTCAGTGCCTTGTCTGAGAACTCCACGCACTTGATGAACGCTGCCCAGAAGTTGGACCACTGCCTGCAGAACCTGAGCACGAGACTGGATGGGGTCAGCCGAAGCTCGGAAATCCATTTTGCGGAAACTGGGCTGGAACTGGAGGCGACTAAAGTGGCTGCGTTCAAAAGCATCAACGAGTTAGCGGCTAATCTCAGCAGCCAGGAGAGACATCTGCGGGAGCTTGAACTTTACTTGGACAGTATCTATCAGCAAGTCCAATCAAGAAATGACCAAACCACCAACACAGTTGCAGAGGATTGCAGCTGTCAAGAAATTCAAGAATCGTTGATTTCGTTGGAACTGAAGGTGGCCAATGTGACCGACCTGGCCAAAGAAAACCAATACGCCCTGGAAGATGCAGAGGCCAAGAAGAACCAAGGCCTTTCAAGTCCTTGGGCCATGCAAGTGGAAGATCTTCATCAAGCCTTGTTGAGCGTGAAGGAATCGTTGGCATTTGAGCAAGCGAAGAGCAGGACTCTTAATGAAGACTTATCCCAATTGAAAGGCTCGCTCTTGGGAAGCCAAAGGGAGATACTTGAGCTCAACGAGAGTTTTGGTGTCAAAGCTACTGAGATTAAACACCTCTCTGCATCTTTCTCGTCCCTACTCAAGGATGCAATACGTCACTCTGAGGTTCTGGAGATACTTTTAGGAGACGAGGTCATGGAGTTCTCAAGCTGGTCCAATAACCAGCAGAAAGAGCTGTCCATTCCAGTTCTACTGCAGAGATTAAAGCTCATGCAAGACAAGATGGAAACCCATGAGATTAGCCTGGAATCGTTGAGAATAAAGCAGAAAAGACCTGAAAAAGATCATCACCAGATGACCAGCGATGACCCGGTGGCATTCTCAGATTGGGGCCTCATTGACAACCAAGGAAGGAACGTTGAAGATCATCATGAAGATCACTACGTACCGCTGAGTCCCGCCCTCGAAGAAGATAATGATGACGACGGCGGGGACTACTCAGTCAGCGACTTCTGGAGTTTGGGAAGGGAAGTGGAGGAGCTGGCGAACAGGATCATTCAGATAGAACAGAAACCCTGCAACTGCACTGCCGACCCCGGTGGCTCAGTGGAGGAACTGCAGGCGGAGGTCGCCTCCCTACGACAGGATCTGGGGGATCATCTGAGAATCTTCCAGAATTTGTTCAGCCACACAGAAGAGCTGGCCAGGGCTTCCCACAGCCTCAACTTGGAACAGCTGTGGACGATGCTTTCCAGGAAGGacaggaagaaaaagaaagggcaGACTGTGAAGGAGAAAGGAGTGGAGTCGAGTGGAATACGCAAGAAAAGAAGCATTGGAAAAGGGTCACCATTCTCTCAGCTTGCATTCGTCACAACTTTGCGAGACAGGATCAATGAAAAAGACACAATATTTGTCTCTGAGAAGGTGTCTCTAAACCATGGCAATGCTTACAGACCTTCTATAGGAGAATTCCAGGCTCCTCAGGCTGGTTTCTACCCCTTTTTAGTGACCTTGGACTTTGAAACAGGCCCTGGATTGGCTCAACTAAGACGTGGCACGGTACCCGTGGCCTCCCTCAGACAAGTTAAGGGTACTGAAGGACTGTTGAGCCAAGCAAGTCTCCTGAAGCTTCAGGAAGGTGATAAAGTTACACTGGAACTGGTGAAAGGAAGACTACGCCAAGGACAGCCTAATGACAATACACTGTCTGGGGTTCTGCTGTTTGGAACTGAAGACCTGGACAAGAGAACTGAATCAGAACCGGTTCTATAAGAAAAGGCTCTGGCCAGTCAGAGGAATTAACTGTGGCCAAAACTGCCAAACACACCAAAGACTTTAGTACACAAAAAGACTCCATATTGGATTCTAAACTGAAGAGCTAAGCCAGATTTGTTGTGCTTGAGTGCCTCCTGTGGCCATCTGCAGAACTGCAAaaaacaacccatacagatttcACCCAGagacatacaggtgcatctcaaagaATTAAgattatcattgaaaagttgcttt

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0048731 system development biological_process
GO:0002520 immune system development biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001944 vasculature development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71934 lncRNA downstream 1544 19435683 ~ 19436089 (-) True G53343
TU71933 lncRNA downstream 4145 19433036 ~ 19433488 (-) True G53342
TU71929 lncRNA downstream 38425 19398815 ~ 19399208 (-) True G53338
TU71897 lncRNA downstream 106233 19304310 ~ 19331400 (-) True G53316
TU71901 lncRNA downstream 136534 19269530 ~ 19301099 (-) True G53317
TU71938 lncRNA upstream 44235 19503610 ~ 19506504 (-) True LOC111192626
TU71939 lncRNA upstream 44235 19503610 ~ 19506504 (-) False LOC111192626
TU71940 lncRNA upstream 44235 19503610 ~ 19506504 (-) False LOC111192626
TU71942 lncRNA upstream 44235 19503610 ~ 19506504 (-) False LOC111192626
XR_002650038.1 lncRNA upstream 45429 19504804 ~ 19505286 (-) False LOC111192626
XM_022670896.1 mRNA downstream 294353 19122620 ~ 19143280 (-) True LOC111192707
XM_022670316.1 mRNA downstream 696329 18730043 ~ 18741304 (-) True LOC111192624
XM_022670315.1 mRNA downstream 709400 18696994 ~ 18728233 (-) True LOC103028095
XM_007259723.3 mRNA downstream 748033 18656832 ~ 18689600 (-) False LOC103024498
XM_022670332.1 mRNA upstream 63327 19522702 ~ 19570378 (-) True LOC103025665
XM_022670333.1 mRNA upstream 146180 19605555 ~ 19670670 (-) True LOC103036701
XM_022670334.1 mRNA upstream 223016 19682391 ~ 19839582 (-) True LOC103034301
XM_007235647.3 mRNA upstream 442918 19902293 ~ 19906073 (-) True LOC103035166
XM_007235649.3 mRNA upstream 583122 20042497 ~ 20089372 (-) False LOC103035481
TU71687 other downstream 770346 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 2847850 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 2847850 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 3010020 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 3210459 16226236 ~ 16227174 (-) True G52503
TU71983 other upstream 390575 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 843160 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 1222436 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 1324363 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 1358464 20817839 ~ 20819409 (-) True G53607

Expression Profile