RNA id: XM_022670415.1


Basic Information

Item Value
RNA id XM_022670415.1
length 1138
RNA type mRNA
GC content 0.47
exon number 8
gene id srrd
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27207308 ~ 27211033 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTCTCTTGACAtactttttacatatttttgtattttgtcattaattaaaaaaagctaaGTTCTTTCCTCAGAAGGTCTTTGGTATGGCTTACTAGGAACCGCATCGCAGGAACAACACGGACCTGTTAAAATGTAACACCACAACACTGCAGCAAGCGGCAttgatggAGAGCAGCGGTGAGTGGCAGTGTGTGCGGCGGGGTAAAAGAGCAGCACGGAGAGGAAAAGCTGATCAGTCCCGAAacccaacagcagcagctcctgAACCCGCAGACAGAGAGCGAGACACCCGCAGAATAACTGAAGCAGTTAATGAGCTGAGATGTGAAGATTTCTGGCTGGAATGGCGAGATCTCCTTTCAGGCTGTCTCGTGGGGTCTGGCTGCAGTAGCAGTAAGGAGAACACAGTGGGTGAATGgcagctggagtgtgtgtgttatggccTGGGCAACTTCTCCTCCTGCGTGTCGGCCAGGTATCAGCTCGCCATGCTGCTACTGCTGTTTGAGGCTTTGCAGATTCCTGTGGGCCAGTGCAGCATGTATGACCCGGTGTTCACTGTGACAGAGTGCGAGATCCTCAAAGAGCTGGGCTTCACTGTGCTGACTGAAAACGAGGAAGGGAAACGAGCAGTGTGTCATCCCACCTTCTTCTACTTAATGCACTGCGGAAAAGCTCTGTACAACAACCTGCTATGGAGCAACTGGAGTCCACAAGTCCTGCCAAACGTCATCGTTATTGGCAACAGTTTTCTTGGCATTCAGGAGAGgATGCTTCAGCGGGAGTTTGAAAGAGATTACAACTTTCTCTCACACATTGTAAACGTGTGTGAGGAAACAAGCCTGCCCTGTTCACAACGCTTCATGGATGTGTTTAATGACAGTGCACTCATCCAGTTCCCAGCAGAcaaacttcagaaacttccagaaTCCATCTGGACTGATCTTACAGAACCCCAGTACCAGCACTGTCATGATCTGGAGATCATCCAGAGAGGCAGTAGGCATTTACAGGATGATAAATGTGCTTAAACACTGTAAGGTGTGTTTGGAGGACCCACAATAAGGACACTTAAAATATGTAATGCTtgtgttttttactttatgtaattaaaaattttattctctattttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73763 lncRNA downstream 146857 27058737 ~ 27060451 (-) True G54716
TU73745 lncRNA downstream 233216 26973568 ~ 26974092 (-) True G54702
TU73739 lncRNA downstream 234315 26962935 ~ 26972993 (-) True G54699
TU73680 lncRNA downstream 396640 26804601 ~ 26810668 (-) True G54656
TU73665 lncRNA downstream 427610 26776566 ~ 26779698 (-) False LOC103024953
TU73981 lncRNA upstream 32047 27243080 ~ 27245098 (-) True G54869
XR_002650060.1 lncRNA upstream 200201 27411234 ~ 27412937 (-) True LOC111192649
XR_002650061.1 lncRNA upstream 451293 27662326 ~ 27663868 (-) True LOC111192650
TU74040 lncRNA upstream 501439 27712472 ~ 27714921 (-) False G54916
TU74039 lncRNA upstream 503012 27714045 ~ 27714921 (-) True G54916
XM_007247196.3 mRNA downstream 133290 27071878 ~ 27074018 (-) True cldn5
XM_007247198.3 mRNA downstream 158246 27041506 ~ 27049062 (-) True ufd1
XM_007247200.3 mRNA downstream 172334 27029916 ~ 27034974 (-) True tmem127
XM_022670410.1 mRNA downstream 178814 27024622 ~ 27028494 (-) True LOC103022143
XM_022670409.1 mRNA downstream 178817 27024622 ~ 27028491 (-) False LOC103022143
XM_007247186.3 mRNA upstream 11807 27222840 ~ 27236161 (-) True LOC103044306
XM_022670422.1 mRNA upstream 29957 27240990 ~ 27259800 (-) True LOC103044021
XM_007247185.3 mRNA upstream 29957 27240990 ~ 27249609 (-) False LOC103044021
XM_022670436.1 mRNA upstream 296670 27507703 ~ 27588964 (-) False LOC103030651
XM_022670429.1 mRNA upstream 296670 27507703 ~ 27588964 (-) False LOC103030651
TU73957 other downstream 38798 27166686 ~ 27168510 (-) True G54854
TU73608 other downstream 631565 26573400 ~ 26575743 (-) True ccl28
TU73603 other downstream 637377 26558406 ~ 26569931 (-) True LOC103042298
trnak-uuu_38 other downstream 1611311 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 1612144 25595092 ~ 25595164 (-) True trnak-uuu_37
TU73985 other upstream 258185 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 517678 27728711 ~ 27731079 (-) True G54947
TU74195 other upstream 942388 28153421 ~ 28157449 (-) True G55023
TU74384 other upstream 1206700 28417733 ~ 28423955 (-) True LOC111192657
TU74381 other upstream 1387245 28598278 ~ 28600510 (-) False LOC103031600

Expression Profile