RNA id: XM_007250120.3


Basic Information

Item Value
RNA id XM_007250120.3
length 2802
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC103047279
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21830839 ~ 21870274 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATACTTGGTTGGTAGAGTTTGGGGACGGGACCTGGGCGTGTTGAGAGCTGAGGGAGATTCAGGGGGATAGCTAACAGTTACAGtttttaagctaattaaaagtagtttaagtaaaattagtTAATTCCCTGGCTGTATGCGCTGGTAATAAGCTGTAAGGTGTGGATTAAGttgtgtattttggtgtgtaAATCTGTGTGGGTTCAGTAgtcttgctgctgctgctggaagtGAGGCGGGATGTCCGGAGAGCTCAGGCCCAGGCAGTGTGTGTTGGAAAAGGGCAGCGATGGATACGGTTTCCACCTGCACGGAGAGAAGGGCAAGCCGGGTCAGTACATACGGCTGGTGGAGGCCGACTCTCCGGCCGAGGTCTCGGGTCTCCTGGCCGGGGACAGGCTGGTGTTCGTGGACGGGGAGAGCGTGGAGGGAGAGAGCCACCAACAGGTGGTGTCCCGCATACGAGCGGTGACCGGTAAGCTGGAGCTGATCGTGGTGGACTCCGCGACCCAGGACCTGCTCACTAAACTCAGCCTCAAGTGCCAGAAGGAGTTCGTCACCGACGGGATTCCCTCCGCCGCGGCTGCCGCCGCCGAGCCGGAGCCCCGCAGGGAGCTGGAGAACGGCACGCCGAGAGAGGAGAGCCCACAGCCCGGCGCTAACGGAGACTCCTCCGCCGCTGCTGCCGCCTTCGACAGGCTGAGCGTCAGCTCTAAGGAATCGAAGAACGAGCTTCGCCCCCGCCTCTGCCACATGAAGAAAGGAGCCACAGGCTATGGCTTCAACCTCCACAGTGATAAGTCCAAACCTGGCCAGTATATCAGGGCAGTGGACGAGGACTCCCCGGCCGAGAAAGCTGGACTTCGACCTCAAGATAAAGTAGTGCAGGTGAATGGCGTGTCTGTGCATGGCATGCAGCACTCTGATGTGGTGGGAGCCATTAAGACAGGAGGAGATGAGCTTCGGCTGCTGGTGGTCGACCCAGACACAGAAGCATACTTCAACAGCTGCCAGGTTCTCCCCACTGAGGAGCACCTCACAGGCCCTCTACCTGAACCTGCAGCCAGCAAGGAGATTGCAGAAGAAAAGgtgaaggaggaggagcCAGCTCAGGAAGCCAAACCCAAAATATCAGCCAGTCCCTCTACATCCAGCACTTCCTCCACTGCATCCATccctgctgctactgctgctgctactgctgccaGCAGTCCACCCCCAGAGGAGAAGCTGATGGAGAGGAGTGTGGGCGGGGATGCAGGAGCGAATCTGGATCTGGGTTTGTCGCTGCAGCAGGCCAAGGAGCGCGCTCACCAGAAACGCTCCAACAAGAAAGCGCCGGCTATGGACTGGAGCAAGAGGAGCGAGCTGTTCAGTAATCTCTAAAAATCACAGCCCTTAAAgccctgtttctctctccaattatcattcattattttatttttatcctttatttcatttatttataaagttcaCAATCCTCCCTGTCAAGCTCATGAACCAAGTTCCTCAGATTCTGTGatcagctgtgttttttttaaagggctactgaaaaaataaaagaggtaGAAAAAGGGAAATACTGAAATTCTGCTCCTGCTCTCACTGTAAAAGGAGATGAAATCACTGTCTTGTTATGGTGAcaggatatttttgttttgtttctttgttctttctTCCAtctcttccttccttcttttgttttttttgtttgttttagccatctctctctgtgtcacacacactcagaactcGTATGAACATTTCAAGCCAGTGTTATTTTGCTTTGATGATTTTATATGGAGAACTATATcagtgtgttggagtgtgtgttcaTACACGTATTTTCTTAGTTCACAACTTTTCACATATCAATCATCTTAAttaattcttcttttttctttagatGTAATGTTACCATATTATGTACAGTATAGAGTTTAATACTATtaaataaatgggaaatgcGTCATAAACCATATTAGTTTCCTGAATTTTGTTCATAAAGGCATGTAAATGCCCCTGTGGGATATTTGAGTGATGCAGCAAACTGTAcagtctacctgtctgtctgtctgtctgcttttGAACATTTATTTTGATGGTTGAATATATAACTGTAGCTTTCAGAACAACTGTAATTGTGTAGAATTAGCATTTTCGGGGGCTAATGCTTTCTTATAATGATGTCtgatgaaaagaaaaatagttaaaataagaGCAGATATTCttaatacaattataaataaaggctactttctctttttaaagATCTGTAAAGCTGAGCCACTGTTTTTTAGATTTGCTATTTTTTCTATATCGGGGAAATCCTAAATCTCTAACATGGACCGTGCTGTCAGCTTGTTTGTAAAACATtcctttataaaaaatatgtttagaagtctgtcttttttttttatagaattttaTAATTAgatttgtttatgtacattagTCCTGATCTGAAAATCAAACCACTGTTATACAGTCACCCaaagtttatttaatattttaaatatttgctcGTAAAACTCGCAATTATTTagctttgatttatttgtacTTTGAAGCACAATGCTGTTGTTTCCTTCAGATTTGTCACGTTTGCAATTTgttgttgatttaaaaaaaaaaatcatgtttagctgttgactgcagaattatttttcttttttttttttaaagaacattcCTGAACAAATGACCACTGTTGTATCACTGTACACGTCTCCTTAGCTCTGTGATAGTTTAGCTGTTATTAATGATGAATATATAAAGATGAATAAATCAATTTTGGCGTA

Function

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0043113 receptor clustering biological_process
GO:0055078 sodium ion homeostasis biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72605 lncRNA downstream 22383 21798459 ~ 21808456 (-) False G53851
TU72602 lncRNA downstream 22383 21804529 ~ 21808456 (-) False G53851
TU72606 lncRNA downstream 23706 21798459 ~ 21807133 (-) True G53851
TU72607 lncRNA downstream 23706 21798459 ~ 21807133 (-) False G53851
TU72599 lncRNA downstream 32402 21792568 ~ 21798437 (-) True G53850
TU72620 lncRNA upstream 16280 21886554 ~ 21888629 (-) True G53858
TU72629 lncRNA upstream 23152 21893426 ~ 21897580 (-) True G53861
TU72614 lncRNA upstream 37411 21907685 ~ 21916759 (-) False G53856
TU72615 lncRNA upstream 37411 21907685 ~ 21916759 (-) False G53856
TU72617 lncRNA upstream 37411 21907685 ~ 21916759 (-) True G53856
XM_022670348.1 mRNA downstream 160891 21655617 ~ 21669948 (-) False LOC103044518
XM_022670350.1 mRNA downstream 160908 21655617 ~ 21669931 (-) False LOC103044518
XM_022670349.1 mRNA downstream 161053 21655617 ~ 21669786 (-) True LOC103044518
XM_022670347.1 mRNA downstream 445954 20984459 ~ 21384885 (-) True LOC103027095
XM_007230971.3 mRNA downstream 1250235 20572412 ~ 20580604 (-) True LOC103043231
XM_007250121.3 mRNA upstream 3215 21873489 ~ 21885441 (-) True narf
XM_007250125.3 mRNA upstream 49255 21919529 ~ 21921617 (-) True ddit4
XM_007250124.3 mRNA upstream 62995 21933269 ~ 21938448 (-) True anapc16
XM_007250129.3 mRNA upstream 176222 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA upstream 176222 22046496 ~ 22053903 (-) False LOC103023380
TU72277 other downstream 1011430 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 1043221 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 1140417 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1528211 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 1980489 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 976402 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1221032 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2471126 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 2916920 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3696000 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile