RNA id: XM_007250121.3


Basic Information

Item Value
RNA id XM_007250121.3
length 2338
RNA type mRNA
GC content 0.48
exon number 12
gene id narf
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21873489 ~ 21885441 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGCGCCGCAGTTCAGCTGAAGGACAATGAAGGCGGCTGGCGCTGTGTTGAGTAATCGGGGAGTTCGTGTTCAGCGTTTCTTCAGTGTTTTTGAGCTAAAAATGGGCTGCGGCGGTGGGGACCGACCTGTTGCTGTGGGCTGTGGGCGATGTGAGCGGATCTGCCCTGTTTTTTGATGACCGTTTGGACTTTAGGAGGAAAAACCGAGTGAAAACCGAAGGCTAGCGAAtccgtgtttactgtgtttcgGTTTCCAGTGGAGAAAGCTGTGTTTCTGCCGGGCTAATAATCGAGCTAAACACTGGACTGGACTTTTAAACCCGGCCAGCAGACTGTCTGCACTTAGTCCTGAGATCCTGACAGCCtgcaaataaaccaaataacctTCATCCTTTACTTCAGGATTATCCCTCATAGGAACTACTTTTATAATGTCTGAAGTAAACATTGCAAGGAAGAAAGAGAAGTGTGAGAATTGCACTAAACAGtgcaaTAAGAAACAGAGTGATGATGCTCTAAGCTCACTGCAGGAGAGTGGCATTGCCAATGGAGAGGTGAGCGGACACACTCCGTCTCAGGCAGTGCTGCTGAGCGCATGCCTGTCGTGTGATGGCTGTGTGTCTGAAGAAGAGAGCCAGAGAATCTCTCAGCAGAGCCTTCAGGGAATCAATCGTGTCCTAGCCCTTAATAAGAAGTGTGATGTGTCCAAGCACAAAATGCTGGTGGTGTCTGTGTGTCCTCAGTCCTTGCCGTTTTTCGCTGTCAAATTTCACCTGGATATCCCAGAAGCTGCTCAAAAACTCTGTGGCTTTCTGAAGAGTGTGGgAGTTAAACATGTGTTTGACACTACACTGGCTGCTAGTTTCAGTATTCTGGAGAGCCAGAAGGAGTTTGTACAGAGATATCGCCGCAGACATCACGACACTCATGCTATGCCAATGTTCACCTCTTCTTGTCCAGGATGGATCCGCTATGCAGAGCATGTGCTTGGAAGTCTAGTCACTCCACACATCTGTACAGCACGATCACCTCAGCAGGTCATGGGCTCTCTCGTGAAAGACTACTTTGCCAGGCAGCAGAAGCTGACCCCAGAGCAGGTGTACCATGTGGTAGTGGCTCCCTGCTTTGATAAGAAGCTGGAAGCGGTGAGGGAGGAGTTCTATAACAGCCTGCTGGACAGCAGAGACGTGGACTGCGTGCTGACCTCAGTGGAAATTCTGCACATGATGGAGCAGAGTAATGTTTCAATGGAGAGCATCAATCCTGTTCCTCTAGATCACGTGTTTGGCGAGATCAATGATCCAAGCTTGATGAGACATGATGGTCGAGGCTCTGAAGGCTTCCTGGAgcatattttcaaacatgcagccAAAGAGCTTTTTGGGCTGGAAGTTGAAGAAATTGTATACAAGACTCTTAGAAACCGAGATTTCCAAGAGGTGGTGCTAGAGCGTGACGGAGAGACTCTGCTCCAGTTTGCTGCAGTCTATGGCTTCCGGAACATTCAGACACTGGTGCATCGCATGCGGAAAGGCAGAGTGCCGTATCAGCTAGTGGAAGTTCTGTCCTGTCCAGGAGGCTGTGTGAGTGGGCGTGGCCAGGCTGAGGGAGAGGGAGGCAAGCCTGACCGTGCCCTGATCCAGCAGATGGAGGAGGCCTACAGTAGTCTGCCCGTCCGACTCCCTGAGGCCAACCCTGAGGTCCAGCGCCTTTACCAGGACTGGCTAGAGGGCCAGGACTCTCCTCACGCCCAGCAGATCCTCCACACCAAATACAGCAAACCCACACAGCCCCCCGCACAAACACTGATCCCTGATATACAGTGGTGAGGAACCGGGGGGCTTTAAAGGGACCATTTATTTCATGTATATCTGAAGAGAGATGCAGCAGAGTTTCATTAGTGACAAAGAAAAGTTTCCaaacaaagactaagactgaggctggagctgtACTGTGATCATTCTGGCCACAGCCAGACGACTGCACAGAGTCCGTCCAAGAGACATATCACATGACCTGAAAGCAACCAATccaaggagtttttttttttttttttaagttatgcaGTTTATGTGCTTGTAAGTCTTCTTTCATTGCTTATATAAAAGATGTCATAAATGGATTATAAACTCATAAGAGGAGCTTAGCAATAACATAGGGCATTGTCTACTTACAAAATATTATGACCattgatttaaattaattacGAGTTTATATCTTGTCTGCACGGACTGTCTGTGTCTATCTGGGCTTTAccctaaaatgacaaaaacaaagaGTGCTAAAGCCTAATTATTGGTgccacaatataataaaaataaccaaTCAGTGACCAAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72605 lncRNA downstream 65033 21798459 ~ 21808456 (-) False G53851
TU72602 lncRNA downstream 65033 21804529 ~ 21808456 (-) False G53851
TU72606 lncRNA downstream 66356 21798459 ~ 21807133 (-) True G53851
TU72607 lncRNA downstream 66356 21798459 ~ 21807133 (-) False G53851
TU72599 lncRNA downstream 75052 21792568 ~ 21798437 (-) True G53850
TU72620 lncRNA upstream 1113 21886554 ~ 21888629 (-) True G53858
TU72629 lncRNA upstream 7985 21893426 ~ 21897580 (-) True G53861
TU72614 lncRNA upstream 22244 21907685 ~ 21916759 (-) False G53856
TU72615 lncRNA upstream 22244 21907685 ~ 21916759 (-) False G53856
TU72617 lncRNA upstream 22244 21907685 ~ 21916759 (-) True G53856
XM_007250120.3 mRNA downstream 3215 21830839 ~ 21870274 (-) True LOC103047279
XM_022670348.1 mRNA downstream 203541 21655617 ~ 21669948 (-) False LOC103044518
XM_022670350.1 mRNA downstream 203558 21655617 ~ 21669931 (-) False LOC103044518
XM_022670349.1 mRNA downstream 203703 21655617 ~ 21669786 (-) True LOC103044518
XM_022670347.1 mRNA downstream 488604 20984459 ~ 21384885 (-) True LOC103027095
XM_007250125.3 mRNA upstream 34088 21919529 ~ 21921617 (-) True ddit4
XM_007250124.3 mRNA upstream 47828 21933269 ~ 21938448 (-) True anapc16
XM_007250129.3 mRNA upstream 161055 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA upstream 161055 22046496 ~ 22053903 (-) False LOC103023380
XM_007250130.3 mRNA upstream 171532 22056973 ~ 22065003 (-) True LOC103023701
TU72277 other downstream 1054080 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 1085871 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 1183067 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1570861 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 2023139 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 961235 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1205865 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2455959 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 2901753 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3680833 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile