RNA id: XM_007250129.3


Basic Information

Item Value
RNA id XM_007250129.3
length 3706
RNA type mRNA
GC content 0.37
exon number 7
gene id LOC103023380
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 22046496 ~ 22054088 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgctgctctctgtATGGTTGCCACGGACGCCGTCTCCTCTCAGCGGCGCCGTTAGCTAACGAGCAGTAGGCTAACGGGTTAACGGGTTATTCCTACACTATATAAGCTAATTTTAGCTATTATAGCTCAGCTGAGGACACCGGGACTCTCGGAGAAGCGGTTACTGTGATTAATAAGAGGAGACACCACCCGCAATGTCATTTATATTTGACTGGATCTACCGAGGCTTTAGTGGTGTACTACAGTTCCTTGGTCTGTATAAGAAAACAGGGAAGCTGGTGTTCCTAGGGTTGGATAATGCTGGGAAGACGACACTGCTGCACATGCTGAAGGATGACCGGCTGGGACAGCATGTGCCTACACTACATCCTACCTCAGAAGAGCTGACCATTGCTGGAATGACCTTCACAACATTTGATCTCGGTGGTCACGTACAAGCCAGGAGAGTGTGGAAGAATTATCTCCCAGCTGTGAATGGCGTGGTATTTCTTGTCGACTGTGCAGATCACGAGCGGCTCGCTGAGTCAAAGGTTGAGCTTGATGCACTGCTGTCAGATGAGACTATATCTAACGTGCCGATCTTGGTGTTGGGGAATAAAATCGATCGTCCAGAGGCAGTGAGTGAAGTGAGGCTACGAGAAGTCTTCGCTCTTGATGGACAGACCACTGGGAAGGGAAGCGTGTCACTGAAGGAGCTAAATGTACGTCCGTTAGAAGTCTTCATGTGCAGTGTTCTGAAGAAACAGGGCTATGGAGAAGGCTTCCGCTGGCTCTCTCAGTACATCGACTGAGTGGAGAGTCATGGACAAGATTCCTACTTCTGACTTCTGATAAGCATTTTGATAATGGGGCCCAGGAAGAGAACTGGGTATTGGTATAAAGACACTAATCCACCCTCAGAGTCCAACACTCTCAACATTCATCCTGGAATGTAAAATGCATATATGATTTTAAGTTATGTTGTCTAAAAACCTCAGACCTATAAAGGtatttaacattgttgtttggGCCAGTCAGCTATTCATGTCAAGTCACACATATGTACACTATTTCTGCTGTCTGTTTCTGAATATGTGTGCTTATATGTGACATATTTTATTGTAGTGTAATATCTATTTGGTATAATACAGCACTTTGAGTTTAGGCTGGAGCACGGCTTTTGCTGAAGTAGTAGGAAGTACTGCCAACATGAAGTCATATCGATAGAACCCAAAATGCAAAGACATACGTTTTAAAAGGCTTGGATTTTccctaaaaacatttataaatgaatGGAAGTCGCTTCCTGTGACTGGAGTGTTCACTCCCAGTCCTGGGTGAGGCTGTGCTTCAGCATATTTTGGCAATTTCCCTCCTTAAATCCATGTGTTAATTGCAGTGATAATATTGGAATAGCAGTATTAATGAGTATCTGGATCAGGCCAGTATCAGAATGGGAAAGGAGGGTAGAATAAATTTGATCCGATCCTGTTAGACATCTATACTAAAATAGCACACACTCAGACTTTGTGCTGAGTGTTTGAAAAGCTTTTAGAAAACATTGGGTCATACAATGAGGGCAATTTAGGGCACTGTAAtagtagaaaaaataaagccataatATTAAGTCATGCAATATGGCATTCCAGGAATTAAATCATAATACTTGGAGAATAAAGACATAATACTTAAGGAATAAGTTGTAATGTTTTGATATTTGAGTTGCTACTACCAGGAAAGTCGCATTATTATGACCAAAACGTTGCAAAAATTAGATATTAACAGTCTCCTGTTAAAATGAGGCAGGCTGATGATTTTGGTTGttatatactataataatatCTTGGTCTCTTAGTATAAGAACATTGGCATGTCTGTGCAGATCTTTATTTAGACAAAAGAAGCAGATGGACATGGAGGAAGAGTATTTTTGGTAAAGTTGCCCATTTCTACAGAGCTATCAGTGGGAACATCTCAATGCTAGTCTAAGAGGGCATGTAATTAAACCCTTTGACCATAATATTGTGACTTTTCTTGGTAGTTGTACCACATGGTGGTATTAATGGTGGAATTTTATgactttattttctaaataattatgactttattctcgaaAATATTAGTGTTATTCTTAATGtctacttattttacttttaaatccCGTCATAGGGCCAGGATTACCCCAAACtctacatttttaatatcagtATTGTAAACCAAAAACTAGTATTGTTCAAGCCTTCAGGACCGGGAGTAAATACCCAGGATCTATTATCTGCAGGTTTGCATACACCCTATTAGATTACatccctgctgaaaaatccagctCCTCTCAAACATTTGCTAGTAGCtgatttttgattttgattttttttggtgaaaaatatgCTCATCTAATCAAAAACATACCCTGTACGGAAGGGGTggaacaaaatatcaatatttagatTTCATTTGCGATACATTATTGATATTGGCATCAAATATggatgtgtttatatttttagtacAATATAAGCACCCCAAAGTAAGAATCCCAgagtttggtcatactggttgtcTAGTTTGGTTAAGGTGGTAGCTTGGAGGATAACCATGCTTGTAGACCAGATAAACCATCaaactttcaaaaaaaaaaaaaaaaccctgtgcTGGTCAAGACTTGAACCAGCTTGAGCTGACCAGACTGTTTATTTCAGCAAGGATGTACTGTCAATTCGTATTGTCTGAGTATAAATAAGATTACATATCCTctacataaagcaaaaaagATTATATGAGAGCTAATACATTTATTCAAACCACTTTTGTATAGTAATTGTGCATTTGATGTGTGAAGAAGGGTGTTTTCTGTGGAGGAtttgtaaatgttattttttttttttttattcaggcttTTGCATATACAACTATATATGTGatagtatgtatgtgtgtggcgttaatacttgattttaatttatgtatttaattaactgaattgtagataaaaaaaatataatgaagtatataataatattatatctaGTTCATACATGATGTTTATCATTAATAACTTATTTAAGATTAATAGTAAAAGGTCATGCAGCCTCTGTTCCCTATATGTTTATGAAGCAATAACACTTCAGCTCCGTGTGAATATTTAACGAGTGGAATGGAAGGAAGATCCTGTTCTGCAGACTTTTTACTCATTCATGACTTTGATGTCCATGGCTGTTTAAATTTGTATAGCCCTTCAGGCTGTAGTGACACCACATAGAACCCCCTGCGTCACACGGGGGTGATGCAAACATGACAAAGTATGGCTAGCTTGTGAAATACTAATATAATTTTCCTCTGAGATGTTCTAAAAGTAATATATTaaagtgtacagtatatgtgtcaTATTGTAGATAATGTTCATACTGTGTTCTGCCTGAATTCTAGATCTTCTTGCTATATTGCAGAGTAATACGTGTCTGAGGATTCGTCTGCTGCAGGTATTTGGTGAATATCAGTGGTTTGTGTTTGAAGCACTGATAGGAGAGTATGTGCAGCATTAAGTAGCTAATGAATGTGGTTCTCATTTATCAGTGTTTGCACActtgtaaatattgtataatgAAGTCCATATGTGTTTCTACACTTCATAGCCTTGAACTGAATCCaggtatttaaatgtttaaactgaTTATGTACTATTATGTATGTAAGAAAATGTCATCTATAAATATTTTGAACAATCCAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72638 lncRNA downstream 105146 21940602 ~ 21941350 (-) True G53868
TU72614 lncRNA downstream 129737 21907685 ~ 21916759 (-) False G53856
TU72708 lncRNA upstream 102901 22156989 ~ 22158000 (-) True G53918
TU72715 lncRNA upstream 144160 22198248 ~ 22298487 (-) True G53924
TU72717 lncRNA upstream 263306 22317394 ~ 22409390 (-) True G53926
TU72719 lncRNA upstream 263306 22317394 ~ 22449619 (-) False G53926
TU72726 lncRNA upstream 488082 22542170 ~ 22542524 (-) True G53932
XM_007250124.3 mRNA downstream 108048 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 124879 21919529 ~ 21921617 (-) True ddit4
XM_007250121.3 mRNA downstream 161055 21873489 ~ 21885441 (-) True narf
XM_007250120.3 mRNA downstream 176222 21830839 ~ 21870274 (-) True LOC103047279
XM_022670350.1 mRNA downstream 376565 21655617 ~ 21669931 (-) False LOC103044518
XM_007250130.3 mRNA upstream 2885 22056973 ~ 22065003 (-) True LOC103023701
XM_022670368.1 mRNA upstream 2440227 24494315 ~ 24607305 (-) True zeb1
XM_022670382.1 mRNA upstream 2732163 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 2732163 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 2732163 24786251 ~ 24878021 (-) False svil
TU72277 other downstream 1227087 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 1258878 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 1356074 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1743868 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 2196146 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 792588 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1037218 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2287312 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 2733106 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3512186 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile