RNA id: XM_015607074.2


Basic Information

Item Value
RNA id XM_015607074.2
length 2789
RNA type mRNA
GC content 0.39
exon number 10
gene id lrrc2
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25612122 ~ 25621265 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaagcgctttccccccacatcactcctagggcctctgtgagctgatgtactggaaccgagtcgctgcgctgccTCAACAACAGCTCCAAAAGAAGCGGAAGCTGGCTTCAAATGTTTCAGAGAAACCATAATGAGGACAGATTCGCTGGGAATTGACATTCCTGTATATGACCTTTCACTGATTCGTGGTCTCTGGGAGACCCGAGTAAGGAAGCACAAACAGCGGCAGAGAAAAGAGCTGGAGAGGGTCGAGAAAAGTGCCCTGAACAAGATAAATCAGCAATGGCAGTATCGTATAGCATGCAGAAAAATGAAGATCAAAGAAGTAAACGCACTCCAGTGCTATCTGGAGAGATCAGCCTTTGCAGAAATGGACATTTTACCCACAGTCGACACAACAGACCTCGACAGCGAATATAAAAAATTCATTTTTGAGCTGCATGGAAAGAAATGGAGGAAACTACCAGAAGATCTTcaaattatgacttttctcaGAGAATGGCATATTCGTGGAACAAGTATTCAAAAGGTTCCAACCTACATTGAAGAGTTTGTGGACCTGCGGGTCCTGGACATACCAAAAAACGGATTTACAATGCTCCCCCCTGAGATAGGAAAGCTTGTAAACCTAAAGGAACTAAATGTGAATTACAATAAGCTATCCATCATTCCTCCTGAACTTGGGGAATGTGAAAATCTGGAGAAACTGGAAATGACAGCCAATGGTGATCTTTCAGAACTGCCCTTTGAGCTAAGCAACTTAAAAGCGCTAAAGCATCTGGACCTAGCAGAAAACAAGTTTGCCACCATACCGATCTGCGTGCTTCGAATGTCAAGCTTGCAATGGTTGGACATGAGCAACAACAGACTCACTGATTTGCCAGAAGATATCGACAGACTCAGCGATCTACAGACAATGTTCCTGCACAAGAACAAACTGACATACCTGCCGATGGTGATGGCAAATATGGATAAACTCAAGATGCTAGTTGTCAGTGGAGATGAATTAACCAACTTACCTTCCAAACTCTGTGACAGTCCGGATATAAAaTTCATCAAACTATTTGATAATCCAATTGGCAAgaatgaagaggaggagaaacatCACTCCATCAGTAACGccacagaggaggaggaggaggaccaTGAGAAGGAGTTCATGCAGACATATGTTGAGACTCTGAAGGATAGAGCTACAGCACCAACCTACACTACTAAAGTTTCCTTGACCTGCCTTCTTTAATCAACCTGATGATTTCGCAGCCAGTTTTGGGCACCACCAGCAAGACTGAAGAAATCAGTGgaggggagagaaaaaagttgtattttgtatttactcaccTTATTTAATTCAGCCTCATTCACAGATGAAGGTGTGGcgtttttagattatttttgaagttttgagtttttattttgaaaattcTTCTATTTTACAAATGACTGCATGCTGTTTTTGGTGGCTGGATGAGTAAATGTTGTATGTCTCTcctacatatataatataggcTAGCAGATGACCACAGTTATTAGGCTTTGTGTACTAATGTGACCAAATATTGTTGCTGGACAATGGCCGAGTTTGTTTCCAATAAGTTGCattgttgtctttttttatgtattgaGAATATTGactttgtaaaaatatattcttcATATTGATTTAAACATCTACACATTGCTAAGGGTTTAGTCTCCTTCAGCTAAAAACAGTTTTGTAGAAAATCAAAAGGCTATCGCAAGCATGAGAGGTTTGGAGAATGTTAAGCAAGTACGGTGAAATACATAAAAGCCTGTTTTTATTGCACTaaaattatttgcattttctattattttattttatttagtattttgcaAATGCTTATTGCACAATTAAATACACTcattgtgaaaaatatttgcATCCAGAAGAAATCAAAGACAGGAATGGCAGACTTTTATGGAGTAATTTAGAATGGCAGTGGGTTATCTTCAGGTCATCtcgcttttgtcttggtggaaaTGACAGagaacacattttacacaaccagaaggcctggtgtcatggtgtggggtgcaatttcatacatggccagatcacctttggtcttcattacaggcgcTTTGACAACTCAGTGTTACGTTAATGAGGTTTTGCAGCCAGTGGCCCTACCCTACTCTGAACAGACACTCGGGTGTGCTATTCCTACAATACAATTTtccgtccacatactgctgccatttcaagagcttgccttaaaAACACAGATATTTTGCCATGGCCAGTCATGTCACTAGATCTATCCTTAATTGAAAATGTATAGGTTGCTATTGGATGTGCTATTTACCCCCCACCCATACCGCAAACTCTGCAGaaactgtgtgaaaatatttAAGCTGCATCTAATGGtttatcacaggacaccattaggaacctctacaactcaatGCCAAAATCTCTGGAATGTTGTTTTACTCATGAATTACACACTTCTTCCATgtttagctcaataaatatgaccaataAATATGTCCTGGTTACCTTTATATTCCTTCCAAATAACATTGCTAAATTTAACACTCCCTTTTGGATGCAGTCATTTTTGCAACAATTTCCTTGATTGTGAGTGTAGCTTCCTTGATTGTAGAATAGTACTAAAAGGTTTCTATAGTAGCTGTAAAACTTGATATAGTGCAATACATGTTTTGTTGAGTATGTTGTATGTTGAGACCTTTCCTATATCAAAGTTCTGtgattttacacaatgtttacctttatatgcaattaaaaaaagacaagacaaagaCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73430 lncRNA downstream 6915 25602417 ~ 25605207 (-) True G54466
TU73420 lncRNA downstream 49983 25550321 ~ 25562139 (-) False fam240a
TU73402 lncRNA downstream 86953 25524104 ~ 25525169 (-) True G54448
TU73401 lncRNA downstream 86953 25524519 ~ 25525169 (-) False G54448
TU73284 lncRNA downstream 265425 25333400 ~ 25346697 (-) True G54358
TU73444 lncRNA upstream 8530 25629795 ~ 25633221 (-) True G54471
TU73463 lncRNA upstream 28189 25649454 ~ 25694995 (-) True G54486
TU73467 lncRNA upstream 107118 25728383 ~ 25728601 (-) True G54490
TU73475 lncRNA upstream 133457 25754722 ~ 25755060 (-) True G54498
TU73505 lncRNA upstream 318437 25939702 ~ 25994673 (-) True G54524
XM_022670400.1 mRNA downstream 50055 25549350 ~ 25562067 (-) True fam240a
XM_007260763.3 mRNA downstream 67595 25541306 ~ 25544527 (-) True LOC103035302
XM_007260769.2 mRNA downstream 71723 25532060 ~ 25540399 (-) True LOC103036837
XM_015608712.2 mRNA downstream 91896 25510629 ~ 25520226 (-) False LOC103035606
XM_007254052.3 mRNA upstream 159164 25780429 ~ 25966065 (-) True efna5
XM_007254053.3 mRNA upstream 473846 26095111 ~ 26529204 (-) True fbxl17
XM_022670403.1 mRNA upstream 566841 26188106 ~ 26529204 (-) False fbxl17
XM_007254067.3 mRNA upstream 938636 26559901 ~ 26569939 (-) False LOC103042298
XM_022670413.1 mRNA upstream 952417 26573682 ~ 26575743 (-) False ccl28
trnak-uuu_38 other downstream 16125 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 16958 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 17791 25594259 ~ 25594331 (-) True trnak-uuu_36
trnak-uuu_35 other downstream 19205 25592845 ~ 25592917 (-) True trnak-uuu_35
trnak-uuu_34 other downstream 20617 25591433 ~ 25591505 (-) True trnak-uuu_34
TU73603 other upstream 937141 26558406 ~ 26569931 (-) True LOC103042298
TU73608 other upstream 952135 26573400 ~ 26575743 (-) True ccl28
TU73957 other upstream 1545421 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 1847953 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 2107446 27728711 ~ 27731079 (-) True G54947

Expression Profile